RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 TMEM56-RWDD3S4R434 201 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 ALMS1Q8TCU4 4167 aa7.56□□□□□ -1.2
SCN1A-222ENST00000642141 KNCNA6PVL3 124 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 IFNA10P01566 189 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 ZNF688P0C7X2 276 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 SULT1A3P0DMM9 295 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 SULT1A4P0DMN0 295 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 CRYBB3P26998 211 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 OR10J1P30954 320 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 P2RY1P47900 373 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 PRSS54Q6PEW0 395 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 TMED4Q7Z7H5 227 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 SLC24A4Q8NFF2 622 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 OR11H2Q8NH07 326 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 OR52E5Q8NH55 327 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 SOSTQ9BQB4 213 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 PTTG2Q9NZH5 202 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 SCP2D1Q9UJQ7 156 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 KCNIP3Q9Y2W7 256 aa7.55□□□□□ -1.2
SCN1A-222ENST00000642141 PLECQ15149 4684 aaKnown RBP7.55□□□□□ -1.2
SCN1A-222ENST00000642141 RPS10-NUDT3A0A1W2PQS6 291 aa7.54□□□□□ -1.2
SCN1A-222ENST00000642141 CCDC160A6NGH7 325 aa7.54□□□□□ -1.2
SCN1A-222ENST00000642141 IGLC1P0CG04 106 aa7.54□□□□□ -1.2
SCN1A-222ENST00000642141 NPY1RP25929 384 aa7.54□□□□□ -1.2
SCN1A-222ENST00000642141 NANOS2P60321 138 aaKnown RBP7.54□□□□□ -1.2
SCN1A-222ENST00000642141 SUPT4H1P63272 117 aaKnown RBP7.54□□□□□ -1.2
SCN1A-222ENST00000642141 AARDQ4LEZ3 155 aa7.54□□□□□ -1.2
SCN1A-222ENST00000642141 C2orf83Q53S99 150 aa7.54□□□□□ -1.2
SCN1A-222ENST00000642141 NMSQ5H8A3 153 aa7.54□□□□□ -1.2
SCN1A-222ENST00000642141 CEMP1Q6PRD7 247 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-222ENST00000642141 GSG1LQ6UXU4 331 aa7.54□□□□□ -1.2
SCN1A-222ENST00000642141 STHQ8IWL8 128 aa7.54□□□□□ -1.2
SCN1A-222ENST00000642141 Q8WTZ3 238 aa7.54□□□□□ -1.2
SCN1A-222ENST00000642141 RBKSQ9H477 322 aa7.54□□□□□ -1.2
SCN1A-222ENST00000642141 TMEM231Q9H6L2 316 aa7.54□□□□□ -1.2
SCN1A-222ENST00000642141 FBXL17Q9UF56 701 aa7.54□□□□□ -1.2
SCN1A-222ENST00000642141 TRAV30A0A087WSZ9 112 aa7.53□□□□□ -1.2
SCN1A-222ENST00000642141 A0A1W2PS18 150 aa7.53□□□□□ -1.2
SCN1A-222ENST00000642141 SCGB2A1O75556 95 aa7.53□□□□□ -1.2
SCN1A-222ENST00000642141 IL4P05112 153 aa7.53□□□□□ -1.2
SCN1A-222ENST00000642141 CD5P06127 495 aa7.53□□□□□ -1.2
SCN1A-222ENST00000642141 DHRS2Q13268 280 aa7.53□□□□□ -1.2
SCN1A-222ENST00000642141 SMCO1Q147U7 214 aa7.53□□□□□ -1.2
SCN1A-222ENST00000642141 USF2Q15853 346 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-222ENST00000642141 ACTL10Q5JWF8 245 aa7.53□□□□□ -1.2
SCN1A-222ENST00000642141 OR1S2Q8NGQ3 325 aa7.53□□□□□ -1.2
SCN1A-222ENST00000642141 RNASEH2CQ8TDP1 164 aaKnown RBP7.53□□□□□ -1.2
SCN1A-222ENST00000642141 PHLDA1Q8WV24 401 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-222ENST00000642141 NARS2Q96I59 477 aaKnown RBP7.53□□□□□ -1.2
SCN1A-222ENST00000642141 SCGB3A2Q96PL1 93 aa7.53□□□□□ -1.2
SCN1A-222ENST00000642141 BCL7BQ9BQE9 202 aa7.53□□□□□ -1.2
SCN1A-222ENST00000642141 RABL2AQ9UBK7 228 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-222ENST00000642141 RABL2BQ9UNT1 228 aa7.53□□□□□ -1.2
SCN1A-222ENST00000642141 NUPR2A6NF83 97 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 K7EQG2 157 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 IFNA4P05014 189 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 HNRNPCP07910 306 aaKnown RBP eCLIP7.52□□□□□ -1.21
SCN1A-222ENST00000642141 RD3LP0DJH9 198 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 IAPPP10997 89 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 SLC25A4P12235 298 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 VAMP1P23763 118 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 CCR6P51684 374 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 KLF9Q13886 244 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-222ENST00000642141 PSMG4Q5JS54 123 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 LGI3Q8N145 548 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 TMEM217Q8N7C4 229 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 OR51G1Q8NGK1 321 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 OR1S1Q8NH92 325 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 DTD1Q8TEA8 209 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 LINC00476Q8WZB0 136 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 IL22RA2Q969J5 263 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 PPP1R14BQ96C90 147 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 GRAMD2BQ96HH9 432 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 CLEC5AQ9NY25 188 aa7.52□□□□□ -1.21
SCN1A-222ENST00000642141 PAIP2BQ9ULR5 123 aaKnown RBP7.52□□□□□ -1.21
SCN1A-222ENST00000642141 A0A0B4J2A0 478 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 GIG44P09565 113 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-222ENST00000642141 PSG1P11464 419 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 YPEL3P61236 119 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-222ENST00000642141 ZNF90Q03938 601 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 CNPY1Q3B7I2 92 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 C16orf54Q6UWD8 224 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 TOMM5Q8N4H5 51 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 C11orf45Q8TAV5 145 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 DCANP1Q8TF63 244 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 GATAD1Q8WUU5 269 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 GLMPQ8WWB7 406 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 PBDC1Q9BVG4 233 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 MAGT1Q9H0U3 335 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 HSPB7Q9UBY9 170 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 SHPKQ9UHJ6 478 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 KLK5Q9Y337 293 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-222ENST00000642141 U3KQE9 123 aa7.51□□□□□ -1.21
SCN1A-222ENST00000642141 TRAV2A0A0B4J234 112 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 LINC00854A0A1B0GVQ3 168 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 ZFP92A6NM28 416 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 ANXA3P12429 323 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 C4BPBP20851 252 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 DEFB1P60022 68 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 OR2F1Q13607 317 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms