RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 USMG5Q96IX5 58 aa7.6□□□□□ -1.19
CLN3-261ENST00000637686 ARV1Q9H2C2 271 aa7.6□□□□□ -1.19
CLN3-261ENST00000637686 UQCC1Q9NVA1 299 aa7.6□□□□□ -1.19
CLN3-261ENST00000637686 TRBV9A0A0B4J1U6 114 aa7.59□□□□□ -1.19
CLN3-261ENST00000637686 FAM223BA6NKX1 122 aa7.59□□□□□ -1.19
CLN3-261ENST00000637686 DEFA4P12838 97 aa7.59□□□□□ -1.19
CLN3-261ENST00000637686 NKX2-5P52952 324 aaPredicted RBP7.59□□□□□ -1.19
CLN3-261ENST00000637686 SLURP1P55000 103 aa7.59□□□□□ -1.19
CLN3-261ENST00000637686 ATP5G2Q06055 141 aa7.59□□□□□ -1.19
CLN3-261ENST00000637686 ARL16Q0P5N6 197 aa7.59□□□□□ -1.19
CLN3-261ENST00000637686 KPRPQ5T749 579 aaPredicted RBP7.59□□□□□ -1.19
CLN3-261ENST00000637686 FAM223AQ8IWN6 122 aa7.59□□□□□ -1.19
CLN3-261ENST00000637686 LILRB2Q8N423 598 aa7.59□□□□□ -1.19
CLN3-261ENST00000637686 VN1R17PQ8TDU5 208 aa7.59□□□□□ -1.19
CLN3-261ENST00000637686 PHYHIPLQ96FC7 376 aa7.59□□□□□ -1.19
CLN3-261ENST00000637686 FANCD2OSQ96PS1 177 aa7.59□□□□□ -1.19
CLN3-261ENST00000637686 MCRIP2Q9BUT9 160 aaKnown RBP7.59□□□□□ -1.19
CLN3-261ENST00000637686 NPVFQ9HCQ7 196 aa7.59□□□□□ -1.19
CLN3-261ENST00000637686 CYTL1Q9NRR1 136 aa7.59□□□□□ -1.19
CLN3-261ENST00000637686 GAR1Q9NY12 217 aaKnown RBP7.59□□□□□ -1.19
CLN3-261ENST00000637686 NOTCH3Q9UM47 2321 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 I3L2K1 104 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 IFNA5P01569 189 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 TRBV12-3P01733 135 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 PRB2P02812 416 aaPredicted RBP7.58□□□□□ -1.2
CLN3-261ENST00000637686 TPT1P13693 172 aaKnown RBP7.58□□□□□ -1.2
CLN3-261ENST00000637686 HOXD3P31249 432 aaPredicted RBP7.58□□□□□ -1.2
CLN3-261ENST00000637686 MFAP2P55001 183 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 C15orf32Q32M92 178 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 OR8G2PQ6IF36 304 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 EIF5AL1Q6IS14 154 aaKnown RBP7.58□□□□□ -1.2
CLN3-261ENST00000637686 ZNF343Q6P1L6 599 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 SLC16A13Q7RTY0 426 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 TMEM144Q7Z5S9 345 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 TMEM217Q8N7C4 229 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 NECAP1Q8NC96 275 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 TMEM116Q8NCL8 245 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 DLX4Q92988 240 aaPredicted RBP7.58□□□□□ -1.2
CLN3-261ENST00000637686 GNPNAT1Q96EK6 184 aaPredicted RBP7.58□□□□□ -1.2
CLN3-261ENST00000637686 SLC35E1Q96K37 410 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 CXorf58Q96LI9 332 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 TXN2Q99757 166 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 KCNIP2Q9NS61 270 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 PEF1Q9UBV8 284 aaKnown RBP7.58□□□□□ -1.2
CLN3-261ENST00000637686 FBXL7Q9UJT9 491 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 WDR83OSQ9Y284 106 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 LSM4Q9Y4Z0 139 aaKnown RBP7.58□□□□□ -1.2
CLN3-261ENST00000637686 TIMM9Q9Y5J7 89 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 DMRT1Q9Y5R6 373 aa7.58□□□□□ -1.2
CLN3-261ENST00000637686 SEC14L6B5MCN3 397 aa7.57□□□□□ -1.2
CLN3-261ENST00000637686 K7EIM0 57 aa7.57□□□□□ -1.2
CLN3-261ENST00000637686 OVOL1O14753 267 aa7.57□□□□□ -1.2
CLN3-261ENST00000637686 SCGB2A1O75556 95 aa7.57□□□□□ -1.2
CLN3-261ENST00000637686 NDUFB8O95169 186 aa7.57□□□□□ -1.2
CLN3-261ENST00000637686 IGHV3-23P01764 117 aa7.57□□□□□ -1.2
CLN3-261ENST00000637686 OPRK1P41145 380 aa7.57□□□□□ -1.2
CLN3-261ENST00000637686 SLC25A24Q6NUK1 477 aa7.57□□□□□ -1.2
CLN3-261ENST00000637686 BAP18Q8IXM2 172 aa7.57□□□□□ -1.2
CLN3-261ENST00000637686 THAP8Q8NA92 274 aa7.57□□□□□ -1.2
CLN3-261ENST00000637686 OR4X1Q8NH49 305 aa7.57□□□□□ -1.2
CLN3-261ENST00000637686 GINS3Q9BRX5 216 aa7.57□□□□□ -1.2
CLN3-261ENST00000637686 PSMG3Q9BT73 122 aaPredicted RBP7.57□□□□□ -1.2
CLN3-261ENST00000637686 ZNF471Q9BX82 626 aaPredicted RBP7.57□□□□□ -1.2
CLN3-261ENST00000637686 GPR61Q9BZJ8 451 aa7.57□□□□□ -1.2
CLN3-261ENST00000637686 WDR61Q9GZS3 305 aaKnown RBP7.57□□□□□ -1.2
CLN3-261ENST00000637686 FNDC4Q9H6D8 234 aaPredicted RBP7.57□□□□□ -1.2
CLN3-261ENST00000637686 PAIP2BQ9ULR5 123 aaKnown RBP7.57□□□□□ -1.2
CLN3-261ENST00000637686 MEGF8Q7Z7M0 2845 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 NOTCH1P46531 2555 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 TRAV30A0A087WSZ9 112 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 MT-CO2P00403 227 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 SEC11BP0C7V7 166 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 ZP3P21754 424 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 NPBWR1P48145 328 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 KRTAP10-11P60412 298 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 SERF2P84101 59 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 RAB31Q13636 194 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 GAMTQ14353 236 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 CLINT1Q14677 625 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 C9orf66Q5T8R8 295 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 RPL7L1Q6DKI1 246 aaKnown RBP7.56□□□□□ -1.2
CLN3-261ENST00000637686 TEPPQ6URK8 271 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 OR2G3Q8NGZ4 309 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 SCGB1C1Q8TD33 95 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 ST8SIA2Q92186 375 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 MISP3Q96FF7 219 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 BSCL2Q96G97 398 aaPredicted RBP7.56□□□□□ -1.2
CLN3-261ENST00000637686 WFDC1Q9HC57 220 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 S4R3C0 116 aa7.56□□□□□ -1.2
CLN3-261ENST00000637686 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.55□□□□□ -1.2
CLN3-261ENST00000637686 TRBV7-1A0A0A6YYK4 115 aa7.55□□□□□ -1.2
CLN3-261ENST00000637686 MFSD2BA6NFX1 497 aa7.55□□□□□ -1.2
CLN3-261ENST00000637686 C17orf112F2Z3M2 114 aa7.55□□□□□ -1.2
CLN3-261ENST00000637686 BMPR1BO00238 502 aa7.55□□□□□ -1.2
CLN3-261ENST00000637686 CFDP00746 253 aaPredicted RBP7.55□□□□□ -1.2
CLN3-261ENST00000637686 FABP1P07148 127 aa7.55□□□□□ -1.2
CLN3-261ENST00000637686 MFAP4P55083 255 aa7.55□□□□□ -1.2
CLN3-261ENST00000637686 SELENOTP62341 195 aa7.55□□□□□ -1.2
CLN3-261ENST00000637686 EGFEM1PQ0D2K5 195 aa7.55□□□□□ -1.2
CLN3-261ENST00000637686 KLF5Q13887 457 aaPredicted RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms