RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 TMEM231Q9H6L2 316 aa8.66□□□□□ -1.02
CLN3-257ENST00000637110 MRPL36Q9P0J6 103 aaKnown RBP8.66□□□□□ -1.02
CLN3-257ENST00000637110 PAIP2BQ9ULR5 123 aaKnown RBP8.66□□□□□ -1.02
CLN3-257ENST00000637110 ALMS1Q8TCU4 4167 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 A0A1B0GU03 582 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 A0A1W2PS18 150 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 IFNA4P05014 189 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 SLC25A4P12235 298 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 RPL35AP18077 110 aaKnown RBP8.65□□□□□ -1.02
CLN3-257ENST00000637110 RND2P52198 227 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 APOC4P55056 127 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 TNFRSF9Q07011 255 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 BSXQ3C1V8 233 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 NMSQ5H8A3 153 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 CENPSQ8N2Z9 138 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 RNASEH2CQ8TDP1 164 aaKnown RBP8.65□□□□□ -1.02
CLN3-257ENST00000637110 DTD1Q8TEA8 209 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 Q8WTZ3 238 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 DEDD2Q8WXF8 326 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 ST8SIA2Q92186 375 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 ACY3Q96HD9 319 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 SRRQ9GZT4 340 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 U3KQ87 197 aa8.65□□□□□ -1.02
CLN3-257ENST00000637110 DUXBA0A1W2PPF3 345 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 CENPXA8MT69 81 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 DFFBO76075 338 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 SFT2D2O95562 160 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 APOHP02749 345 aaPredicted RBP8.64□□□□□ -1.03
CLN3-257ENST00000637110 CD5P06127 495 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 HOXB5P09067 269 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 OR10J1P30954 320 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 RBMS2Q15434 407 aaKnown RBP8.64□□□□□ -1.03
CLN3-257ENST00000637110 ODF3L2Q3SX64 289 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 PRSS54Q6PEW0 395 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 APRG1Q8IVJ8 170 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 STPG3Q8N7X2 389 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 OR1S2Q8NGQ3 325 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 GRAMD2BQ96HH9 432 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 ZNF414Q96IQ9 312 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 ZFAND3Q9H8U3 227 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 HSPB7Q9UBY9 170 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 RABAC1Q9UI14 185 aa8.64□□□□□ -1.03
CLN3-257ENST00000637110 NAP1L6A6NFF2 107 aa8.63□□□□□ -1.03
CLN3-257ENST00000637110 IAPPP10997 89 aa8.63□□□□□ -1.03
CLN3-257ENST00000637110 PPP1R1AQ13522 171 aa8.63□□□□□ -1.03
CLN3-257ENST00000637110 BAK1Q16611 211 aa8.63□□□□□ -1.03
CLN3-257ENST00000637110 LINC00476Q8WZB0 136 aa8.63□□□□□ -1.03
CLN3-257ENST00000637110 NPIPB3Q92617 1050 aa8.63□□□□□ -1.03
CLN3-257ENST00000637110 NDUFA13Q9P0J0 144 aa8.63□□□□□ -1.03
CLN3-257ENST00000637110 PLECQ15149 4684 aaKnown RBP8.63□□□□□ -1.03
CLN3-257ENST00000637110 MED6O75586 246 aa8.62□□□□□ -1.03
CLN3-257ENST00000637110 LY6G6CO95867 125 aa8.62□□□□□ -1.03
CLN3-257ENST00000637110 IGLC1P0CG04 106 aa8.62□□□□□ -1.03
CLN3-257ENST00000637110 RAB11AP62491 216 aa8.62□□□□□ -1.03
CLN3-257ENST00000637110 FAM90A2PQ658T7 463 aa8.62□□□□□ -1.03
CLN3-257ENST00000637110 LILRB2Q8N423 598 aa8.62□□□□□ -1.03
CLN3-257ENST00000637110 STXBP6Q8NFX7 210 aa8.62□□□□□ -1.03
CLN3-257ENST00000637110 SLC35E1Q96K37 410 aa8.62□□□□□ -1.03
CLN3-257ENST00000637110 MS4A6AQ9H2W1 248 aa8.62□□□□□ -1.03
CLN3-257ENST00000637110 VSIRQ9H7M9 311 aa8.62□□□□□ -1.03
CLN3-257ENST00000637110 ZFP92A6NM28 416 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 UBE2CO00762 179 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 SPRY2O43597 315 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 NDUFB6O95139 128 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 IGKV1-17P01599 117 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 IL4P05112 153 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 HNRNPCP07910 306 aaKnown RBP eCLIP8.61□□□□□ -1.03
CLN3-257ENST00000637110 RD3LP0DJH9 198 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 P2RY1P47900 373 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 EIF2B2P49770 351 aaKnown RBP8.61□□□□□ -1.03
CLN3-257ENST00000637110 YPEL3P61236 119 aaPredicted RBP8.61□□□□□ -1.03
CLN3-257ENST00000637110 RPP30P78346 268 aaKnown RBP8.61□□□□□ -1.03
CLN3-257ENST00000637110 ZNF124Q15973 351 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 DEFB135Q30KP9 77 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 LRTM2Q8N967 370 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 GATAD1Q8WUU5 269 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 TMEM170AQ8WVE7 144 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 OVOL2Q9BRP0 275 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 MAGT1Q9H0U3 335 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 MAP6D1Q9H9H5 199 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 TMED3Q9Y3Q3 217 aa8.61□□□□□ -1.03
CLN3-257ENST00000637110 WRBO00258 174 aa8.6□□□□□ -1.03
CLN3-257ENST00000637110 IFNA21P01568 189 aa8.6□□□□□ -1.03
CLN3-257ENST00000637110 SLC25A6P12236 298 aa8.6□□□□□ -1.03
CLN3-257ENST00000637110 CRYBB3P26998 211 aa8.6□□□□□ -1.03
CLN3-257ENST00000637110 ATP5IP56385 69 aaPredicted RBP8.6□□□□□ -1.03
CLN3-257ENST00000637110 DEFB131AP59861 70 aa8.6□□□□□ -1.03
CLN3-257ENST00000637110 UBE2MP61081 183 aaKnown RBP8.6□□□□□ -1.03
CLN3-257ENST00000637110 C4orf46Q504U0 113 aa8.6□□□□□ -1.03
CLN3-257ENST00000637110 GGNBP1Q5YKI7 109 aa8.6□□□□□ -1.03
CLN3-257ENST00000637110 LEMD1Q68G75 181 aa8.6□□□□□ -1.03
CLN3-257ENST00000637110 Q6ZWC4 215 aa8.6□□□□□ -1.03
CLN3-257ENST00000637110 COQ8AQ8NI60 647 aa8.6□□□□□ -1.03
CLN3-257ENST00000637110 CIB3Q96Q77 187 aaPredicted RBP8.6□□□□□ -1.03
CLN3-257ENST00000637110 PBDC1Q9BVG4 233 aa8.6□□□□□ -1.03
CLN3-257ENST00000637110 FLVCR2Q9UPI3 526 aa8.6□□□□□ -1.03
CLN3-257ENST00000637110 KIR2DL5BA0A0G2JN68 375 aa8.59□□□□□ -1.03
CLN3-257ENST00000637110 KIR2DL5BA0A0G2JPC4 375 aa8.59□□□□□ -1.03
CLN3-257ENST00000637110 C9orf170A2RU37 121 aa8.59□□□□□ -1.03
CLN3-257ENST00000637110 HELTA6NFD8 242 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms