RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 C16orf54Q6UWD8 224 aa17.99■□□□□ 0.47
PTPRF-216ENST00000617451 OR1S2Q8NGQ3 325 aa17.99■□□□□ 0.47
PTPRF-216ENST00000617451 OR52E5Q8NH55 327 aa17.99■□□□□ 0.47
PTPRF-216ENST00000617451 GLMPQ8WWB7 406 aa17.99■□□□□ 0.47
PTPRF-216ENST00000617451 AP2S1P53680 142 aaPredicted RBP17.98■□□□□ 0.47
PTPRF-216ENST00000617451 PSMG4Q5JS54 123 aa17.98■□□□□ 0.47
PTPRF-216ENST00000617451 MZT2AQ6P582 158 aa17.98■□□□□ 0.47
PTPRF-216ENST00000617451 PRSS54Q6PEW0 395 aa17.98■□□□□ 0.47
PTPRF-216ENST00000617451 FAM219AQ8IW50 185 aa17.98■□□□□ 0.47
PTPRF-216ENST00000617451 Q8WTZ3 238 aa17.98■□□□□ 0.47
PTPRF-216ENST00000617451 ABHD1Q96SE0 405 aa17.98■□□□□ 0.47
PTPRF-216ENST00000617451 RNF126Q9BV68 326 aa17.98■□□□□ 0.47
PTPRF-216ENST00000617451 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.98■□□□□ 0.47
PTPRF-216ENST00000617451 CDS2O95674 445 aa17.97■□□□□ 0.47
PTPRF-216ENST00000617451 CD74P04233 296 aa17.97■□□□□ 0.47
PTPRF-216ENST00000617451 HNRNPCP07910 306 aaKnown RBP eCLIP17.97■□□□□ 0.47
PTPRF-216ENST00000617451 YPEL3P61236 119 aaPredicted RBP17.97■□□□□ 0.47
PTPRF-216ENST00000617451 MARCH1Q8TCQ1 289 aa17.97■□□□□ 0.47
PTPRF-216ENST00000617451 TMEM222Q9H0R3 208 aa17.97■□□□□ 0.47
PTPRF-216ENST00000617451 CELA1Q9UNI1 258 aa17.97■□□□□ 0.47
PTPRF-216ENST00000617451 RND2P52198 227 aa17.96■□□□□ 0.47
PTPRF-216ENST00000617451 DHODHQ02127 395 aa17.96■□□□□ 0.47
PTPRF-216ENST00000617451 SCGB2B2Q4G0G5 96 aa17.96■□□□□ 0.47
PTPRF-216ENST00000617451 C2orf83Q53S99 150 aa17.96■□□□□ 0.47
PTPRF-216ENST00000617451 TMEM229BQ8NBD8 167 aa17.96■□□□□ 0.47
PTPRF-216ENST00000617451 HEYLQ9NQ87 328 aaPredicted RBP17.96■□□□□ 0.47
PTPRF-216ENST00000617451 EXTL2Q9UBQ6 330 aa17.96■□□□□ 0.47
PTPRF-216ENST00000617451 RYR1P21817 5038 aa17.96■□□□□ 0.47
PTPRF-216ENST00000617451 SLC25A4P12235 298 aa17.95■□□□□ 0.46
PTPRF-216ENST00000617451 OR10J1P30954 320 aa17.95■□□□□ 0.46
PTPRF-216ENST00000617451 C12orf74Q32Q52 190 aa17.95■□□□□ 0.46
PTPRF-216ENST00000617451 LINC00336Q6ZUF6 198 aa17.95■□□□□ 0.46
PTPRF-216ENST00000617451 LHFPL5Q8TAF8 219 aa17.95■□□□□ 0.46
PTPRF-216ENST00000617451 RNASEH2CQ8TDP1 164 aaKnown RBP17.95■□□□□ 0.46
PTPRF-216ENST00000617451 GLYATL2Q8WU03 294 aa17.95■□□□□ 0.46
PTPRF-216ENST00000617451 AP3S1Q92572 193 aa17.95■□□□□ 0.46
PTPRF-216ENST00000617451 FAM90A26D6RGX4 464 aa17.94■□□□□ 0.46
PTPRF-216ENST00000617451 RAB3DO95716 219 aa17.94■□□□□ 0.46
PTPRF-216ENST00000617451 OR5AC1P0C628 307 aa17.94■□□□□ 0.46
PTPRF-216ENST00000617451 TAS2R19P59542 299 aa17.94■□□□□ 0.46
PTPRF-216ENST00000617451 USF2Q15853 346 aaPredicted RBP17.94■□□□□ 0.46
PTPRF-216ENST00000617451 SEPSECSQ9HD40 501 aaKnown RBP17.94■□□□□ 0.46
PTPRF-216ENST00000617451 DEFB131BA0A096LNP1 70 aa17.93■□□□□ 0.46
PTPRF-216ENST00000617451 TEX13DA0A0J9YY54 714 aaPredicted RBP17.93■□□□□ 0.46
PTPRF-216ENST00000617451 AMBPP02760 352 aa17.93■□□□□ 0.46
PTPRF-216ENST00000617451 NUTF2P61970 127 aaKnown RBP17.93■□□□□ 0.46
PTPRF-216ENST00000617451 SNRPD3P62318 126 aaKnown RBP17.93■□□□□ 0.46
PTPRF-216ENST00000617451 STEAP1BQ6NZ63 245 aa17.93■□□□□ 0.46
PTPRF-216ENST00000617451 SLC24A4Q8NFF2 622 aa17.93■□□□□ 0.46
PTPRF-216ENST00000617451 C15orf40Q8WUR7 153 aa17.93■□□□□ 0.46
PTPRF-216ENST00000617451 TMEM170AQ8WVE7 144 aa17.93■□□□□ 0.46
PTPRF-216ENST00000617451 RBPMSQ93062 196 aaKnown RBP17.93■□□□□ 0.46
PTPRF-216ENST00000617451 RTBDNQ9BSG5 229 aaPredicted RBP17.93■□□□□ 0.46
PTPRF-216ENST00000617451 C1QTNF4Q9BXJ3 329 aa17.93■□□□□ 0.46
PTPRF-216ENST00000617451 CACNG5Q9UF02 275 aa17.93■□□□□ 0.46
PTPRF-216ENST00000617451 IL4P05112 153 aa17.92■□□□□ 0.46
PTPRF-216ENST00000617451 ZNF182P17025 639 aaPredicted RBP17.92■□□□□ 0.46
PTPRF-216ENST00000617451 ZNF767PQ75MW2 155 aa17.92■□□□□ 0.46
PTPRF-216ENST00000617451 SELENOHQ8IZQ5 122 aaKnown RBP17.92■□□□□ 0.46
PTPRF-216ENST00000617451 GPR146Q96CH1 333 aa17.92■□□□□ 0.46
PTPRF-216ENST00000617451 NAA60Q9H7X0 242 aa17.92■□□□□ 0.46
PTPRF-216ENST00000617451 NRN1Q9NPD7 142 aa17.92■□□□□ 0.46
PTPRF-216ENST00000617451 H3BMM0 161 aa17.91■□□□□ 0.46
PTPRF-216ENST00000617451 BUB3O43684 328 aa17.91■□□□□ 0.46
PTPRF-216ENST00000617451 XCL2Q9UBD3 114 aa17.91■□□□□ 0.46
PTPRF-216ENST00000617451 C14orf166Q9Y224 244 aaKnown RBP17.91■□□□□ 0.46
PTPRF-216ENST00000617451 CEBPZOSA8MTT3 80 aa17.9■□□□□ 0.46
PTPRF-216ENST00000617451 NXPH3O95157 252 aa17.9■□□□□ 0.46
PTPRF-216ENST00000617451 CTF1Q16619 201 aa17.9■□□□□ 0.46
PTPRF-216ENST00000617451 ETFRF1Q6IPR1 90 aa17.9■□□□□ 0.46
PTPRF-216ENST00000617451 NPIPB3Q92617 1050 aa17.9■□□□□ 0.46
PTPRF-216ENST00000617451 NAA50Q9GZZ1 169 aaKnown RBP17.9■□□□□ 0.46
PTPRF-216ENST00000617451 DYNC1H1Q14204 4646 aaKnown RBP17.89■□□□□ 0.46
PTPRF-216ENST00000617451 A0A1B0GVY2 172 aa17.89■□□□□ 0.45
PTPRF-216ENST00000617451 GABARAPH6UMI1 98 aa17.89■□□□□ 0.45
PTPRF-216ENST00000617451 GABARAPO95166 117 aa17.89■□□□□ 0.45
PTPRF-216ENST00000617451 TOMM40O96008 361 aa17.89■□□□□ 0.45
PTPRF-216ENST00000617451 RD3LP0DJH9 198 aa17.89■□□□□ 0.45
PTPRF-216ENST00000617451 P0DMU3 169 aa17.89■□□□□ 0.45
PTPRF-216ENST00000617451 FAM231AP0DMU4 169 aa17.89■□□□□ 0.45
PTPRF-216ENST00000617451 FAM231CP0DMU5 169 aa17.89■□□□□ 0.45
PTPRF-216ENST00000617451 FAAP20Q6NZ36 180 aa17.89■□□□□ 0.45
PTPRF-216ENST00000617451 SIGLEC15Q6ZMC9 328 aa17.89■□□□□ 0.45
PTPRF-216ENST00000617451 POM121L12Q8N7R1 296 aa17.89■□□□□ 0.45
PTPRF-216ENST00000617451 SCRT1Q9BWW7 348 aa17.89■□□□□ 0.45
PTPRF-216ENST00000617451 GSTZ1O43708 216 aaPredicted RBP17.88■□□□□ 0.45
PTPRF-216ENST00000617451 NPY1RP25929 384 aa17.88■□□□□ 0.45
PTPRF-216ENST00000617451 SSBP1Q04837 148 aaKnown RBP17.88■□□□□ 0.45
PTPRF-216ENST00000617451 MEF2DQ14814 521 aa17.88■□□□□ 0.45
PTPRF-216ENST00000617451 SURF2Q15527 256 aaPredicted RBP17.88■□□□□ 0.45
PTPRF-216ENST00000617451 GPR107Q5VW38 600 aa17.88■□□□□ 0.45
PTPRF-216ENST00000617451 TMEM268Q5VZI3 342 aa17.88■□□□□ 0.45
PTPRF-216ENST00000617451 ACY3Q96HD9 319 aa17.88■□□□□ 0.45
PTPRF-216ENST00000617451 NDUFAF3Q9BU61 184 aa17.88■□□□□ 0.45
PTPRF-216ENST00000617451 PKD1P98161 4303 aa17.87■□□□□ 0.45
PTPRF-216ENST00000617451 DNAH11Q96DT5 4516 aa17.87■□□□□ 0.45
PTPRF-216ENST00000617451 CRYM-AS1A6NIL9 109 aa17.87■□□□□ 0.45
PTPRF-216ENST00000617451 HLA-DRB4P13762 266 aa17.87■□□□□ 0.45
PTPRF-216ENST00000617451 ZNF705AQ6ZN79 300 aaPredicted RBP17.87■□□□□ 0.45
PTPRF-216ENST00000617451 NOXA1Q86UR1 476 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms