RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ACY3Q96HD9 319 aa12.79□□□□□ -0.36
SHKBP1-223ENST00000600552 RTBDNQ9BSG5 229 aaPredicted RBP12.79□□□□□ -0.36
SHKBP1-223ENST00000600552 MIXL1Q9H2W2 232 aa12.79□□□□□ -0.36
SHKBP1-223ENST00000600552 PRR13Q9NZ81 148 aa12.79□□□□□ -0.36
SHKBP1-223ENST00000600552 DNAH10Q8IVF4 4471 aa12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 GABARAPH6UMI1 98 aa12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 CTDSP2O14595 271 aa12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 GABARAPO95166 117 aa12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 CDS2O95674 445 aa12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 HNRNPCP07910 306 aaKnown RBP eCLIP12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 GIG44P09565 113 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 HLA-DMBP28068 263 aa12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 EIF2B2P49770 351 aaKnown RBP12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 PRSS54Q6PEW0 395 aa12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 Q8NAQ8 132 aa12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 OR1S2Q8NGQ3 325 aa12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 GLYATL2Q8WU03 294 aa12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 RBPMSQ93062 196 aaKnown RBP12.78□□□□□ -0.36
SHKBP1-223ENST00000600552 HELTA6NFD8 242 aa12.77□□□□□ -0.37
SHKBP1-223ENST00000600552 B3GALNT1O75752 331 aa12.77□□□□□ -0.37
SHKBP1-223ENST00000600552 SMIM18P0DKX4 95 aa12.77□□□□□ -0.37
SHKBP1-223ENST00000600552 SPP1P10451 314 aa12.77□□□□□ -0.37
SHKBP1-223ENST00000600552 MORN3Q6PF18 240 aaPredicted RBP12.77□□□□□ -0.37
SHKBP1-223ENST00000600552 ZNF767PQ75MW2 155 aa12.77□□□□□ -0.37
SHKBP1-223ENST00000600552 FAM219AQ8IW50 185 aa12.77□□□□□ -0.37
SHKBP1-223ENST00000600552 SLC24A4Q8NFF2 622 aa12.77□□□□□ -0.37
SHKBP1-223ENST00000600552 NPIPB3Q92617 1050 aa12.77□□□□□ -0.37
SHKBP1-223ENST00000600552 RAB40CQ96S21 281 aa12.77□□□□□ -0.37
SHKBP1-223ENST00000600552 IL4P05112 153 aa12.76□□□□□ -0.37
SHKBP1-223ENST00000600552 IGLC1P0CG04 106 aa12.76□□□□□ -0.37
SHKBP1-223ENST00000600552 IL18Q14116 193 aa12.76□□□□□ -0.37
SHKBP1-223ENST00000600552 BSXQ3C1V8 233 aa12.76□□□□□ -0.37
SHKBP1-223ENST00000600552 OR52E5Q8NH55 327 aa12.76□□□□□ -0.37
SHKBP1-223ENST00000600552 DCANP1Q8TF63 244 aa12.76□□□□□ -0.37
SHKBP1-223ENST00000600552 TBC1D24Q9ULP9 559 aa12.76□□□□□ -0.37
SHKBP1-223ENST00000600552 IFNA10P01566 189 aa12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 AKAIN1P0CW23 69 aa12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 SLC25A4P12235 298 aa12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 MIFP14174 115 aa12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 SPCS2Q15005 226 aa12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 C2orf83Q53S99 150 aa12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 C16orf54Q6UWD8 224 aa12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 Q6ZTC4 211 aa12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 GPR141Q7Z602 305 aa12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 CLVS1Q8IUQ0 354 aaPredicted RBP12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 OR4C16Q8NGL9 310 aa12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 RNASEH2CQ8TDP1 164 aaKnown RBP12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 DIRAS2Q96HU8 199 aa12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 APLNQ9ULZ1 77 aa12.75□□□□□ -0.37
SHKBP1-223ENST00000600552 ELOA3CA0A087WX78 387 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 CRYM-AS1A6NIL9 109 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 C11orf94C9JXX5 98 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 RD3LP0DJH9 198 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 NPY1RP25929 384 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 AP2S1P53680 142 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 USF2Q15853 346 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 TMEM41BQ5BJD5 291 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 ETFRF1Q6IPR1 90 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 OR51S1Q8NGJ8 323 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 TMEM170AQ8WVE7 144 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 GLMPQ8WWB7 406 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 PBDC1Q9BVG4 233 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 XCL2Q9UBD3 114 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 U3KQE9 123 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 X6R8D5 127 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 VPS13DQ5THJ4 4388 aa12.74□□□□□ -0.37
SHKBP1-223ENST00000600552 SULT1A3P0DMM9 295 aa12.73□□□□□ -0.37
SHKBP1-223ENST00000600552 SULT1A4P0DMN0 295 aa12.73□□□□□ -0.37
SHKBP1-223ENST00000600552 YPEL3P61236 119 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-223ENST00000600552 MRPS10P82664 201 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-223ENST00000600552 SSBP1Q04837 148 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-223ENST00000600552 OR51G1Q8NGK1 321 aa12.73□□□□□ -0.37
SHKBP1-223ENST00000600552 MCUBQ9NWR8 336 aa12.73□□□□□ -0.37
SHKBP1-223ENST00000600552 GPR132Q9UNW8 380 aa12.73□□□□□ -0.37
SHKBP1-223ENST00000600552 KCNIP3Q9Y2W7 256 aa12.73□□□□□ -0.37
SHKBP1-223ENST00000600552 TRAV10A0A0B4J240 114 aa12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 FAM90A26D6RGX4 464 aa12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 IGKV3-20P01619 116 aa12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 AKR1C4P17516 323 aa12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 TCTAP57738 103 aa12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 SNRPD3P62318 126 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 SURF2Q15527 256 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 GSG1LQ6UXU4 331 aa12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 SIGLEC15Q6ZMC9 328 aa12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 SMIM4Q8WVI0 70 aa12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 LINC00052Q96N35 136 aa12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 PRRT1Q99946 306 aa12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 HRH4Q9H3N8 390 aa12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 CELA1Q9UNI1 258 aa12.72□□□□□ -0.37
SHKBP1-223ENST00000600552 IGHV4-4A0A075B6R2 117 aa12.71□□□□□ -0.37
SHKBP1-223ENST00000600552 ZNF705EA8MWA4 302 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-223ENST00000600552 PSG1P11464 419 aa12.71□□□□□ -0.37
SHKBP1-223ENST00000600552 FXYD7P58549 80 aa12.71□□□□□ -0.37
SHKBP1-223ENST00000600552 DEFB1P60022 68 aa12.71□□□□□ -0.37
SHKBP1-223ENST00000600552 AARDQ4LEZ3 155 aa12.71□□□□□ -0.37
SHKBP1-223ENST00000600552 NOXA1Q86UR1 476 aa12.71□□□□□ -0.37
SHKBP1-223ENST00000600552 RBKSQ9H477 322 aa12.71□□□□□ -0.37
SHKBP1-223ENST00000600552 NRN1Q9NPD7 142 aa12.71□□□□□ -0.37
SHKBP1-223ENST00000600552 PAIP2BQ9ULR5 123 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-223ENST00000600552 TMEM56-RWDD3S4R434 201 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms