RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 MRPL41Q8IXM3 137 aaKnown RBP11.48□□□□□ -0.57
VRK3-217ENST00000599538 OCC1Q8TAD7 63 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 AJUBAQ96IF1 538 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 TMEM167BQ9NRX6 74 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 ZNF462Q96JM2 2506 aa11.48□□□□□ -0.57
VRK3-217ENST00000599538 I3L2K1 104 aa11.47□□□□□ -0.57
VRK3-217ENST00000599538 ORM2P19652 201 aa11.47□□□□□ -0.57
VRK3-217ENST00000599538 CRYBB3P26998 211 aa11.47□□□□□ -0.57
VRK3-217ENST00000599538 GALR1P47211 349 aa11.47□□□□□ -0.57
VRK3-217ENST00000599538 TAS2R45P59539 299 aa11.47□□□□□ -0.57
VRK3-217ENST00000599538 NDPQ00604 133 aa11.47□□□□□ -0.57
VRK3-217ENST00000599538 FXYD3Q14802 87 aa11.47□□□□□ -0.57
VRK3-217ENST00000599538 C5orf64Q2M2E5 130 aa11.47□□□□□ -0.57
VRK3-217ENST00000599538 ETFRF1Q6IPR1 90 aa11.47□□□□□ -0.57
VRK3-217ENST00000599538 BBC3Q96PG8 261 aaPredicted RBP11.47□□□□□ -0.57
VRK3-217ENST00000599538 SUMO1P63165 101 aaKnown RBP11.47□□□□□ -0.57
VRK3-217ENST00000599538 C11orf52Q96A22 123 aa11.47□□□□□ -0.57
VRK3-217ENST00000599538 MRPL32Q9BYC8 188 aaKnown RBP11.47□□□□□ -0.57
VRK3-217ENST00000599538 TRBV24-1A0A075B6N3 115 aa11.46□□□□□ -0.57
VRK3-217ENST00000599538 NCBP2LA6PVI3 153 aaKnown RBP11.46□□□□□ -0.57
VRK3-217ENST00000599538 K7EN84 100 aa11.46□□□□□ -0.57
VRK3-217ENST00000599538 S100A6P06703 90 aa11.46□□□□□ -0.57
VRK3-217ENST00000599538 SELENOTP62341 195 aa11.46□□□□□ -0.57
VRK3-217ENST00000599538 UBE2L3P68036 154 aaKnown RBP11.46□□□□□ -0.57
VRK3-217ENST00000599538 FABP9Q0Z7S8 132 aa11.46□□□□□ -0.57
VRK3-217ENST00000599538 FAM120AOSQ5T036 256 aa11.46□□□□□ -0.57
VRK3-217ENST00000599538 LINC00305Q7Z4B0 112 aa11.46□□□□□ -0.57
VRK3-217ENST00000599538 OR1B1Q8NGR6 318 aa11.46□□□□□ -0.57
VRK3-217ENST00000599538 OR2T10Q8NGZ9 312 aa11.46□□□□□ -0.57
VRK3-217ENST00000599538 TRGV9Q99603 122 aa11.46□□□□□ -0.57
VRK3-217ENST00000599538 S4R3C0 116 aa11.46□□□□□ -0.57
VRK3-217ENST00000599538 CX3CL1P78423 397 aa11.45□□□□□ -0.58
VRK3-217ENST00000599538 ASPHD1Q5U4P2 390 aa11.45□□□□□ -0.58
VRK3-217ENST00000599538 Q8N6K4 173 aa11.45□□□□□ -0.58
VRK3-217ENST00000599538 PFDN5Q99471 154 aa11.45□□□□□ -0.58
VRK3-217ENST00000599538 K7EIM0 57 aa11.45□□□□□ -0.58
VRK3-217ENST00000599538 CORTO00230 105 aa11.45□□□□□ -0.58
VRK3-217ENST00000599538 IGLC1P0CG04 106 aa11.45□□□□□ -0.58
VRK3-217ENST00000599538 FAM3BP58499 235 aaPredicted RBP11.45□□□□□ -0.58
VRK3-217ENST00000599538 MINOS1Q5TGZ0 78 aa11.45□□□□□ -0.58
VRK3-217ENST00000599538 OR1L4Q8NGR5 311 aa11.45□□□□□ -0.58
VRK3-217ENST00000599538 ANAPC16Q96DE5 110 aa11.45□□□□□ -0.58
VRK3-217ENST00000599538 PRELID1Q9Y255 219 aa11.45□□□□□ -0.58
VRK3-217ENST00000599538 MINOS1-NBL1R4GNA1 71 aa11.45□□□□□ -0.58
VRK3-217ENST00000599538 PHOX2AO14813 284 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 HIST1H2BKO60814 126 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 HIST1H2BJP06899 126 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 HIST1H2BOP23527 126 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 HIST1H2BBP33778 126 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 SAA4P35542 130 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 HIST1H2BDP58876 126 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 HIST1H2BCP62807 126 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 HIST2H2BEQ16778 126 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.44□□□□□ -0.58
VRK3-217ENST00000599538 LEMD1Q68G75 181 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 CCDC144NLQ6NUI1 221 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 FRZBQ92765 325 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 HIST1H2BHQ93079 126 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 HIST1H2BNQ99877 126 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 HIST1H2BMQ99879 126 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 PYGO2Q9BRQ0 406 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 PAXXQ9BUH6 204 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 A0A1W2PPQ1 181 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 UBE2CO00762 179 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 BPIFB3P59826 476 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 EBI3Q14213 229 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 LINC00518Q8N0U6 118 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 PIP4P2Q8N4L2 257 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 FXYD5Q96DB9 178 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 SFRP2Q96HF1 295 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 RNF2Q99496 336 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 CCL19Q99731 98 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 OR51M1Q9H341 326 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 ARL2-SNX15V9GYD0 113 aa11.44□□□□□ -0.58
VRK3-217ENST00000599538 IGHV4-61A0A0C4DH41 118 aa11.43□□□□□ -0.58
VRK3-217ENST00000599538 IGKV1-17P01599 117 aa11.43□□□□□ -0.58
VRK3-217ENST00000599538 PSG1P11464 419 aa11.43□□□□□ -0.58
VRK3-217ENST00000599538 UBE2E1P51965 193 aa11.43□□□□□ -0.58
VRK3-217ENST00000599538 OR5I1Q13606 314 aa11.43□□□□□ -0.58
VRK3-217ENST00000599538 TIGITQ495A1 244 aa11.43□□□□□ -0.58
VRK3-217ENST00000599538 C22orf15Q8WYQ4 148 aa11.43□□□□□ -0.58
VRK3-217ENST00000599538 NRGNQ92686 78 aa11.43□□□□□ -0.58
VRK3-217ENST00000599538 LINC00479Q96M42 142 aa11.43□□□□□ -0.58
VRK3-217ENST00000599538 OR5B12Q96R08 314 aa11.43□□□□□ -0.58
VRK3-217ENST00000599538 FAM208BQ5VWN6 2430 aa11.43□□□□□ -0.58
VRK3-217ENST00000599538 EPG5Q9HCE0 2579 aa11.43□□□□□ -0.58
VRK3-217ENST00000599538 A0A1W2PRE2 83 aa11.42□□□□□ -0.58
VRK3-217ENST00000599538 AP4M1O00189 453 aa11.42□□□□□ -0.58
VRK3-217ENST00000599538 TMEM11P17152 192 aa11.42□□□□□ -0.58
VRK3-217ENST00000599538 PDLIM4P50479 330 aa11.42□□□□□ -0.58
VRK3-217ENST00000599538 TEX38Q6PEX7 206 aa11.42□□□□□ -0.58
VRK3-217ENST00000599538 ZNF562Q6V9R5 426 aa11.42□□□□□ -0.58
VRK3-217ENST00000599538 FANCD2OSQ96PS1 177 aa11.42□□□□□ -0.58
VRK3-217ENST00000599538 SRSF8Q9BRL6 282 aaKnown RBP11.42□□□□□ -0.58
VRK3-217ENST00000599538 IGHV3OR16-10A0A075B7F0 116 aa11.42□□□□□ -0.58
VRK3-217ENST00000599538 ELOA3CA0A087WX78 387 aaPredicted RBP11.42□□□□□ -0.58
VRK3-217ENST00000599538 HELTA6NFD8 242 aa11.42□□□□□ -0.58
VRK3-217ENST00000599538 OOSP1A8MZH6 123 aa11.42□□□□□ -0.58
VRK3-217ENST00000599538 TRGC1P0CF51 173 aa11.42□□□□□ -0.58
VRK3-217ENST00000599538 NDUFA6P56556 154 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms