RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 IGLC1P0CG04 106 aa17.33■□□□□ 0.36
LSM4-202ENST00000593564 HLA-DMBP28068 263 aa17.33■□□□□ 0.36
LSM4-202ENST00000593564 ACTL10Q5JWF8 245 aa17.33■□□□□ 0.36
LSM4-202ENST00000593564 STEAP1BQ6NZ63 245 aa17.33■□□□□ 0.36
LSM4-202ENST00000593564 OR1S2Q8NGQ3 325 aa17.33■□□□□ 0.36
LSM4-202ENST00000593564 GABARAPO95166 117 aa17.32■□□□□ 0.36
LSM4-202ENST00000593564 OR5AC1P0C628 307 aa17.32■□□□□ 0.36
LSM4-202ENST00000593564 SLC25A4P12235 298 aa17.32■□□□□ 0.36
LSM4-202ENST00000593564 CTF1Q16619 201 aa17.32■□□□□ 0.36
LSM4-202ENST00000593564 C2orf83Q53S99 150 aa17.32■□□□□ 0.36
LSM4-202ENST00000593564 PRSS54Q6PEW0 395 aa17.32■□□□□ 0.36
LSM4-202ENST00000593564 GLYATL2Q8WU03 294 aa17.32■□□□□ 0.36
LSM4-202ENST00000593564 GLMPQ8WWB7 406 aa17.32■□□□□ 0.36
LSM4-202ENST00000593564 HEYLQ9NQ87 328 aaPredicted RBP17.32■□□□□ 0.36
LSM4-202ENST00000593564 HNRNPCP07910 306 aaKnown RBP eCLIP17.31■□□□□ 0.36
LSM4-202ENST00000593564 RND2P52198 227 aa17.31■□□□□ 0.36
LSM4-202ENST00000593564 YPEL3P61236 119 aaPredicted RBP17.31■□□□□ 0.36
LSM4-202ENST00000593564 DHRS2Q13268 280 aa17.31■□□□□ 0.36
LSM4-202ENST00000593564 C16orf54Q6UWD8 224 aa17.31■□□□□ 0.36
LSM4-202ENST00000593564 Q6ZTC4 211 aa17.31■□□□□ 0.36
LSM4-202ENST00000593564 CSNK1G2-AS1Q8NCQ2 148 aa17.31■□□□□ 0.36
LSM4-202ENST00000593564 LHFPL5Q8TAF8 219 aa17.31■□□□□ 0.36
LSM4-202ENST00000593564 RNASEH2CQ8TDP1 164 aaKnown RBP17.31■□□□□ 0.36
LSM4-202ENST00000593564 Q8WTZ3 238 aa17.31■□□□□ 0.36
LSM4-202ENST00000593564 RBPMSQ93062 196 aaKnown RBP17.31■□□□□ 0.36
LSM4-202ENST00000593564 NAA50Q9GZZ1 169 aaKnown RBP17.31■□□□□ 0.36
LSM4-202ENST00000593564 NAA60Q9H7X0 242 aa17.31■□□□□ 0.36
LSM4-202ENST00000593564 TBC1D24Q9ULP9 559 aa17.31■□□□□ 0.36
LSM4-202ENST00000593564 C14orf166Q9Y224 244 aaKnown RBP17.31■□□□□ 0.36
LSM4-202ENST00000593564 ELOA3CA0A087WX78 387 aaPredicted RBP17.3■□□□□ 0.36
LSM4-202ENST00000593564 TRAV10A0A0B4J240 114 aa17.3■□□□□ 0.36
LSM4-202ENST00000593564 TEX13DA0A0J9YY54 714 aaPredicted RBP17.3■□□□□ 0.36
LSM4-202ENST00000593564 OR10J1P30954 320 aa17.3■□□□□ 0.36
LSM4-202ENST00000593564 AP2S1P53680 142 aaPredicted RBP17.3■□□□□ 0.36
LSM4-202ENST00000593564 SSBP1Q04837 148 aaKnown RBP17.3■□□□□ 0.36
LSM4-202ENST00000593564 RAB40CQ96S21 281 aa17.3■□□□□ 0.36
LSM4-202ENST00000593564 RTBDNQ9BSG5 229 aaPredicted RBP17.3■□□□□ 0.36
LSM4-202ENST00000593564 CLEC5AQ9NY25 188 aa17.3■□□□□ 0.36
LSM4-202ENST00000593564 CACNG5Q9UF02 275 aa17.3■□□□□ 0.36
LSM4-202ENST00000593564 GABARAPH6UMI1 98 aa17.29■□□□□ 0.36
LSM4-202ENST00000593564 DHODHQ02127 395 aa17.29■□□□□ 0.36
LSM4-202ENST00000593564 MEF2DQ14814 521 aa17.29■□□□□ 0.36
LSM4-202ENST00000593564 SURF2Q15527 256 aaPredicted RBP17.29■□□□□ 0.36
LSM4-202ENST00000593564 PSMG4Q5JS54 123 aa17.29■□□□□ 0.36
LSM4-202ENST00000593564 SELENOHQ8IZQ5 122 aaKnown RBP17.29■□□□□ 0.36
LSM4-202ENST00000593564 CENPSQ8N2Z9 138 aa17.29■□□□□ 0.36
LSM4-202ENST00000593564 SLC24A4Q8NFF2 622 aa17.29■□□□□ 0.36
LSM4-202ENST00000593564 PCLOQ9Y6V0 5065 aa17.28■□□□□ 0.36
LSM4-202ENST00000593564 TMEM170AQ8WVE7 144 aa17.28■□□□□ 0.36
LSM4-202ENST00000593564 GPR146Q96CH1 333 aa17.28■□□□□ 0.36
LSM4-202ENST00000593564 IGHV4-4A0A075B6R2 117 aa17.27■□□□□ 0.36
LSM4-202ENST00000593564 CEBPZOSA8MTT3 80 aa17.27■□□□□ 0.36
LSM4-202ENST00000593564 MRPS10P82664 201 aaKnown RBP17.27■□□□□ 0.36
LSM4-202ENST00000593564 USF2Q15853 346 aaPredicted RBP17.27■□□□□ 0.36
LSM4-202ENST00000593564 GPR107Q5VW38 600 aa17.27■□□□□ 0.36
LSM4-202ENST00000593564 ETFRF1Q6IPR1 90 aa17.27■□□□□ 0.36
LSM4-202ENST00000593564 FAAP20Q6NZ36 180 aa17.27■□□□□ 0.36
LSM4-202ENST00000593564 MIXL1Q9H2W2 232 aa17.27■□□□□ 0.36
LSM4-202ENST00000593564 SEPSECSQ9HD40 501 aaKnown RBP17.27■□□□□ 0.36
LSM4-202ENST00000593564 FAT2Q9NYQ8 4349 aa17.27■□□□□ 0.36
LSM4-202ENST00000593564 DNAH2Q9P225 4427 aa17.26■□□□□ 0.35
LSM4-202ENST00000593564 IL4P05112 153 aa17.26■□□□□ 0.35
LSM4-202ENST00000593564 SNRPD3P62318 126 aaKnown RBP17.26■□□□□ 0.35
LSM4-202ENST00000593564 TMEM268Q5VZI3 342 aa17.26■□□□□ 0.35
LSM4-202ENST00000593564 RNF126Q9BV68 326 aa17.26■□□□□ 0.35
LSM4-202ENST00000593564 NRN1Q9NPD7 142 aa17.26■□□□□ 0.35
LSM4-202ENST00000593564 CACFD1Q9UGQ2 172 aa17.26■□□□□ 0.35
LSM4-202ENST00000593564 CRYM-AS1A6NIL9 109 aa17.25■□□□□ 0.35
LSM4-202ENST00000593564 DISC1C4P0D8 188 aa17.25■□□□□ 0.35
LSM4-202ENST00000593564 FAM90A26D6RGX4 464 aa17.25■□□□□ 0.35
LSM4-202ENST00000593564 NOXA1Q86UR1 476 aa17.25■□□□□ 0.35
LSM4-202ENST00000593564 NPIPB3Q92617 1050 aa17.25■□□□□ 0.35
LSM4-202ENST00000593564 C1QTNF4Q9BXJ3 329 aa17.25■□□□□ 0.35
LSM4-202ENST00000593564 GPR132Q9UNW8 380 aa17.25■□□□□ 0.35
LSM4-202ENST00000593564 TMEM56-RWDD3S4R434 201 aa17.25■□□□□ 0.35
LSM4-202ENST00000593564 DNAH17Q9UFH2 4485 aa17.24■□□□□ 0.35
LSM4-202ENST00000593564 BUB3O43684 328 aa17.24■□□□□ 0.35
LSM4-202ENST00000593564 GSTZ1O43708 216 aaPredicted RBP17.24■□□□□ 0.35
LSM4-202ENST00000593564 NXPH3O95157 252 aa17.24■□□□□ 0.35
LSM4-202ENST00000593564 TOMM40O96008 361 aa17.24■□□□□ 0.35
LSM4-202ENST00000593564 SMIM18P0DKX4 95 aa17.24■□□□□ 0.35
LSM4-202ENST00000593564 NPY1RP25929 384 aa17.24■□□□□ 0.35
LSM4-202ENST00000593564 NUTF2P61970 127 aaKnown RBP17.24■□□□□ 0.35
LSM4-202ENST00000593564 SMIM4Q8WVI0 70 aa17.24■□□□□ 0.35
LSM4-202ENST00000593564 CELA1Q9UNI1 258 aa17.24■□□□□ 0.35
LSM4-202ENST00000593564 RD3LP0DJH9 198 aa17.23■□□□□ 0.35
LSM4-202ENST00000593564 C12orf74Q32Q52 190 aa17.23■□□□□ 0.35
LSM4-202ENST00000593564 NMSQ5H8A3 153 aa17.23■□□□□ 0.35
LSM4-202ENST00000593564 SIGLEC15Q6ZMC9 328 aa17.23■□□□□ 0.35
LSM4-202ENST00000593564 ACY3Q96HD9 319 aa17.23■□□□□ 0.35
LSM4-202ENST00000593564 H3BMM0 161 aa17.22■□□□□ 0.35
LSM4-202ENST00000593564 RGS5O15539 181 aa17.22■□□□□ 0.35
LSM4-202ENST00000593564 AMBPP02760 352 aa17.22■□□□□ 0.35
LSM4-202ENST00000593564 AKAIN1P0CW23 69 aa17.22■□□□□ 0.35
LSM4-202ENST00000593564 SULT1A3P0DMM9 295 aa17.22■□□□□ 0.35
LSM4-202ENST00000593564 SULT1A4P0DMN0 295 aa17.22■□□□□ 0.35
LSM4-202ENST00000593564 OR4C16Q8NGL9 310 aa17.22■□□□□ 0.35
LSM4-202ENST00000593564 IL22RA2Q969J5 263 aa17.22■□□□□ 0.35
LSM4-202ENST00000593564 XCL2Q9UBD3 114 aa17.22■□□□□ 0.35
LSM4-202ENST00000593564 DEFB131BA0A096LNP1 70 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms