RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 MBNL3Q9NUK0 354 aaKnown RBP8.05□□□□□ -1.12
LIG3-216ENST00000593099 ZNF581Q9P0T4 197 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 CYSLTR1Q9Y271 337 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 IGHV4-30-2A0A087WSY4 118 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 C15orf61A6NNL5 157 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 C19orf84I3L1E1 186 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 SEC11BP0C7V7 166 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 ZNF137PP52743 207 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 DLX6P56179 175 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 SPATA45Q537H7 98 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 RUSC1-AS1Q66K80 236 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 RNASEH2CQ8TDP1 164 aaKnown RBP8.05□□□□□ -1.12
LIG3-216ENST00000593099 NABP2Q9BQ15 211 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 IGHV4-61A0A0C4DH41 118 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 CXorf1O96002 111 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 IL4P05112 153 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 ZNF345Q14585 488 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 C5orf64Q2M2E5 130 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 ZNF660Q6AZW8 331 aaPredicted RBP8.05□□□□□ -1.12
LIG3-216ENST00000593099 C10orf105Q8TEF2 133 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 TAF15Q92804 592 aaKnown RBP eCLIP8.05□□□□□ -1.12
LIG3-216ENST00000593099 WDR61Q9GZS3 305 aaKnown RBP8.05□□□□□ -1.12
LIG3-216ENST00000593099 SLC35B3Q9H1N7 401 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 FOXA2Q9Y261 457 aaPredicted RBP8.05□□□□□ -1.12
LIG3-216ENST00000593099 S4R3C0 116 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 RHOGP84095 191 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 TM4SF20Q53R12 229 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 MIC13Q5XKP0 118 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 CLEC19AQ6UXS0 136 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 HSPB7Q9UBY9 170 aa8.05□□□□□ -1.12
LIG3-216ENST00000593099 A0A1B0GWB2 263 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 RAMP3O60896 148 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 IGHV3-23P01764 117 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 MT-ND6P03923 174 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 SMIM17P0DL12 118 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 GAGE2BQ13066 116 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 PRSS8Q16651 343 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 GAGE2EQ4V326 116 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 CACNG8Q8WXS5 425 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 RAB37Q96AX2 223 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 MANBALQ9NQG1 85 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 GAGE2DQ9UEU5 116 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 LINC00527Q9UJ94 153 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 TMEM238C9JI98 176 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 DUX4L9Q6RFH8 374 aaPredicted RBP8.04□□□□□ -1.12
LIG3-216ENST00000593099 SMIM20Q8N5G0 67 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 KIR3DL3Q8N743 410 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 PEMTQ9UBM1 199 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 H0YJW9 148 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 ZNF735P0CB33 412 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 RUNX1Q01196 453 aa8.04□□□□□ -1.12
LIG3-216ENST00000593099 C11orf68Q9H3H3 251 aaKnown RBP8.04□□□□□ -1.12
LIG3-216ENST00000593099 CFPP27918 469 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 KRTAP27-1Q3LI81 207 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 NAT8BQ9UHF3 227 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 FAM90A9PA6NNJ1 464 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 GNG4P50150 75 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 FAM3BP58499 235 aaPredicted RBP8.03□□□□□ -1.12
LIG3-216ENST00000593099 ZNF343Q6P1L6 599 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 LHFPL1Q86WI0 220 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 OR51G1Q8NGK1 321 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 ATP6V0BQ99437 205 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 C2orf88Q9BSF0 95 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 LOC107984156A0A0G2JMH3 177 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 ZNF506Q5JVG8 444 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 PQLC2Q6ZP29 291 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 ARL17AQ8IVW1 177 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 C3orf56Q8N813 242 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 C1orf147Q96MC9 270 aaPredicted RBP8.03□□□□□ -1.12
LIG3-216ENST00000593099 COL4A2P08572 1712 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 OR10J6PQ8NGY7 276 aa8.03□□□□□ -1.12
LIG3-216ENST00000593099 MYOD1P15172 320 aa8.02□□□□□ -1.12
LIG3-216ENST00000593099 HOXA4Q00056 320 aaPredicted RBP8.02□□□□□ -1.12
LIG3-216ENST00000593099 PRCDQ00LT1 54 aa8.02□□□□□ -1.12
LIG3-216ENST00000593099 NSUN5P1Q3KNT7 163 aa8.02□□□□□ -1.12
LIG3-216ENST00000593099 C1orf122Q6ZSJ8 110 aa8.02□□□□□ -1.12
LIG3-216ENST00000593099 TMEM167AQ8TBQ9 72 aa8.02□□□□□ -1.12
LIG3-216ENST00000593099 C19orf24Q9BVV8 132 aa8.02□□□□□ -1.12
LIG3-216ENST00000593099 C22orf46C9J442 243 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 PLA2G2AP14555 144 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 POU2AF1Q16633 256 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 C5orf24Q7Z6I8 188 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 C11orf53Q8IXP5 236 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 GATAD1Q8WUU5 269 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 AQP10Q96PS8 301 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 ZNF257Q9Y2Q1 563 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 IGHV3OR16-13A0A075B7E8 117 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 IGHV3-74A0A0B4J1X5 117 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 FCN1O00602 326 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 HTN1P15515 57 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 H2BFSP57053 126 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 RPL30P62888 115 aaKnown RBP8.02□□□□□ -1.13
LIG3-216ENST00000593099 MRPL54Q6P161 138 aaKnown RBP8.02□□□□□ -1.13
LIG3-216ENST00000593099 CDC42EP3Q9UKI2 254 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 C11orf94C9JXX5 98 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 FAM157CP0CG43 387 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 C8orf88P0DMB2 117 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 GPX4P36969 197 aaPredicted RBP8.02□□□□□ -1.13
LIG3-216ENST00000593099 SNRPD3P62318 126 aaKnown RBP8.02□□□□□ -1.13
LIG3-216ENST00000593099 CX3CL1P78423 397 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms