RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 TRIM63Q969Q1 353 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 GPR146Q96CH1 333 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 CIB3Q96Q77 187 aaPredicted RBP7.84□□□□□ -1.15
LIG3-212ENST00000590181 METTL26Q96S19 204 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 V9GYH0 126 aa7.84□□□□□ -1.15
LIG3-212ENST00000590181 RBMY1BA6NDE4 496 aaKnown RBP7.83□□□□□ -1.16
LIG3-212ENST00000590181 RBMY1EA6NEQ0 496 aaKnown RBP7.83□□□□□ -1.16
LIG3-212ENST00000590181 RBMY1DP0C7P1 496 aaKnown RBP7.83□□□□□ -1.16
LIG3-212ENST00000590181 CRYBB3P26998 211 aa7.83□□□□□ -1.16
LIG3-212ENST00000590181 FAM90A2PQ658T7 463 aa7.83□□□□□ -1.16
LIG3-212ENST00000590181 TOMM20LQ6UXN7 152 aa7.83□□□□□ -1.16
LIG3-212ENST00000590181 Q8WTZ3 238 aa7.83□□□□□ -1.16
LIG3-212ENST00000590181 TMEM230Q96A57 120 aa7.83□□□□□ -1.16
LIG3-212ENST00000590181 SEPSECSQ9HD40 501 aaKnown RBP7.83□□□□□ -1.16
LIG3-212ENST00000590181 PCLOQ9Y6V0 5065 aa7.83□□□□□ -1.16
LIG3-212ENST00000590181 IGHV3-21A0A0B4J1V1 117 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 A0A0G2JRQ6 117 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 HELTA6NFD8 242 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 CFDP00746 253 aaPredicted RBP7.82□□□□□ -1.16
LIG3-212ENST00000590181 IFNA10P01566 189 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 NPY1RP25929 384 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 RAB11AP62491 216 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 SUPT4H1P63272 117 aaKnown RBP7.82□□□□□ -1.16
LIG3-212ENST00000590181 ZNF79Q15937 498 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 IZUMO4Q1ZYL8 232 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 TMEM41BQ5BJD5 291 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 CENPSQ8N2Z9 138 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 TMEM217Q8N7C4 229 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 STPG3Q8N7X2 389 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 LHFPL5Q8TAF8 219 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 DTD1Q8TEA8 209 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 RNF2Q99496 336 aa7.82□□□□□ -1.16
LIG3-212ENST00000590181 PUS1Q9Y606 427 aaKnown RBP eCLIP7.82□□□□□ -1.16
LIG3-212ENST00000590181 HECTD4Q9Y4D8 3996 aa7.81□□□□□ -1.16
LIG3-212ENST00000590181 DNASE2O00115 360 aaPredicted RBP7.81□□□□□ -1.16
LIG3-212ENST00000590181 TRIQKQ629K1 86 aa7.81□□□□□ -1.16
LIG3-212ENST00000590181 PRSS54Q6PEW0 395 aa7.81□□□□□ -1.16
LIG3-212ENST00000590181 OR1S1Q8NH92 325 aa7.81□□□□□ -1.16
LIG3-212ENST00000590181 GATAD1Q8WUU5 269 aa7.81□□□□□ -1.16
LIG3-212ENST00000590181 FNDC4Q9H6D8 234 aaPredicted RBP7.81□□□□□ -1.16
LIG3-212ENST00000590181 PITX3O75364 302 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 NDUFB6O95139 128 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 SFT2D2O95562 160 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 IGKV1-17P01599 117 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 RD3LP0DJH9 198 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 OR10J1P30954 320 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 SPINK9Q5DT21 86 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 SAMD13Q5VXD3 122 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 TCF24Q7RTU0 167 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 LYZL2Q7Z4W2 148 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 TMED4Q7Z7H5 227 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 SRRQ9GZT4 340 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 ZFAND3Q9H8U3 227 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 MAP6D1Q9H9H5 199 aa7.8□□□□□ -1.16
LIG3-212ENST00000590181 SPRY2O43597 315 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 IFNA21P01568 189 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 IFNA4P05014 189 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 IGLC1P0CG04 106 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 EDN2P20800 178 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 VAMP1P23763 118 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 RND2P52198 227 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 ODF3L2Q3SX64 289 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 C1orf194Q5T5A4 169 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 OR8G2PQ6IF36 304 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 S100A7AQ86SG5 101 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 COQ8AQ8NI60 647 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 CSTL1Q9H114 145 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 RBKSQ9H477 322 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 FBXL17Q9UF56 701 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 RNF24Q9Y225 148 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 U3KQE9 123 aa7.79□□□□□ -1.16
LIG3-212ENST00000590181 ZNF207O43670 478 aaKnown RBP7.78□□□□□ -1.16
LIG3-212ENST00000590181 TOMM40O96008 361 aa7.78□□□□□ -1.16
LIG3-212ENST00000590181 IGHV3-48P01763 117 aa7.78□□□□□ -1.16
LIG3-212ENST00000590181 HNRNPCP07910 306 aaKnown RBP eCLIP7.78□□□□□ -1.16
LIG3-212ENST00000590181 RPL11P62913 178 aaKnown RBP7.78□□□□□ -1.16
LIG3-212ENST00000590181 GGNBP1Q5YKI7 109 aa7.78□□□□□ -1.16
LIG3-212ENST00000590181 MORN3Q6PF18 240 aaPredicted RBP7.78□□□□□ -1.16
LIG3-212ENST00000590181 OR51G1Q8NGK1 321 aa7.78□□□□□ -1.16
LIG3-212ENST00000590181 NPIPB3Q92617 1050 aa7.78□□□□□ -1.16
LIG3-212ENST00000590181 RNF183Q96D59 192 aa7.78□□□□□ -1.16
LIG3-212ENST00000590181 ZNF414Q96IQ9 312 aa7.78□□□□□ -1.16
LIG3-212ENST00000590181 SLC35E1Q96K37 410 aa7.78□□□□□ -1.16
LIG3-212ENST00000590181 OVOL2Q9BRP0 275 aa7.78□□□□□ -1.16
LIG3-212ENST00000590181 MS4A6AQ9H2W1 248 aa7.78□□□□□ -1.16
LIG3-212ENST00000590181 RETNQ9HD89 108 aa7.78□□□□□ -1.16
LIG3-212ENST00000590181 SLC45A2Q9UMX9 530 aa7.78□□□□□ -1.16
LIG3-212ENST00000590181 MPTX1A8MV57 137 aa7.77□□□□□ -1.17
LIG3-212ENST00000590181 SNRPGP15A8MWD9 76 aa7.77□□□□□ -1.17
LIG3-212ENST00000590181 SYNGR2O43760 224 aa7.77□□□□□ -1.17
LIG3-212ENST00000590181 P2RY1P47900 373 aa7.77□□□□□ -1.17
LIG3-212ENST00000590181 SNRPD3P62318 126 aaKnown RBP7.77□□□□□ -1.17
LIG3-212ENST00000590181 ID3Q02535 119 aa7.77□□□□□ -1.17
LIG3-212ENST00000590181 MLANAQ16655 118 aa7.77□□□□□ -1.17
LIG3-212ENST00000590181 ST8SIA2Q92186 375 aa7.77□□□□□ -1.17
LIG3-212ENST00000590181 RABAC1Q9UI14 185 aa7.77□□□□□ -1.17
LIG3-212ENST00000590181 DNAH10Q8IVF4 4471 aa7.77□□□□□ -1.17
LIG3-212ENST00000590181 IGHV3OR16-8A0A075B7F1 116 aa7.76□□□□□ -1.17
LIG3-212ENST00000590181 C9orf170A2RU37 121 aa7.76□□□□□ -1.17
LIG3-212ENST00000590181 SPP1P10451 314 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms