RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 KRTAP3-2Q9BYR7 98 aa8.55□□□□□ -1.04
ZNF540-208ENST00000589857 NIT2Q9NQR4 276 aa8.55□□□□□ -1.04
ZNF540-208ENST00000589857 YTHDF2Q9Y5A9 579 aaKnown RBP8.55□□□□□ -1.04
ZNF540-208ENST00000589857 IGHV1-3A0A0C4DH29 117 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 OOSP1A8MZH6 123 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 OR10J4P0C629 311 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 MYOD1P15172 320 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 CNN1P51911 297 aaKnown RBP8.54□□□□□ -1.04
ZNF540-208ENST00000589857 UBE2L3P68036 154 aaKnown RBP8.54□□□□□ -1.04
ZNF540-208ENST00000589857 TNXAQ16473 311 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 SPATA31B1PQ5VZV4 182 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 TEX38Q6PEX7 206 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 ZNF841Q6ZN19 808 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 HIST3H2BBQ8N257 126 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 KIR3DL3Q8N743 410 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 LY6G5BQ8NDX9 201 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 OR10W1Q8NGF6 305 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 OR4X1Q8NH49 305 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 IL36BQ9NZH7 164 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 ZNRD1Q9P1U0 126 aa8.54□□□□□ -1.04
ZNF540-208ENST00000589857 FBN3Q75N90 2809 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 A0A0U1RQK1 487 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 ZNF320A2RRD8 509 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 SCGB2A1O75556 95 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 FCN3O75636 299 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 DEFA4P12838 97 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 WT1-ASQ06250 92 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 PLGLAQ15195 96 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 RPEL1Q2QD12 228 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 CCDC144NLQ6NUI1 221 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 Q71RC1 249 aaPredicted RBP8.53□□□□□ -1.04
ZNF540-208ENST00000589857 PPP1R27Q86WC6 154 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 LRRC75A-AS1Q8N1F1 130 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 WFDC11Q8NEX6 87 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 NPIPB3Q92617 1050 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 SMIM12Q96EX1 92 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 EAF1Q96JC9 268 aaPredicted RBP8.53□□□□□ -1.04
ZNF540-208ENST00000589857 PAXXQ9BUH6 204 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 OSTCQ9NRP0 149 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 ONECUT1Q9UBC0 465 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 RNF24Q9Y225 148 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 SIGLEC9Q9Y336 463 aa8.53□□□□□ -1.04
ZNF540-208ENST00000589857 A0A1W2PPI3 338 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 IGLC7A0M8Q6 106 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 XKRY2A2RUG3 117 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 PHOX2AO14813 284 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 PLAUP00749 431 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 MT-ND6P03923 174 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 CRYGCP07315 174 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 CRYGBP07316 175 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 COL8A2P25067 703 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 HTR1DP28221 377 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 GPR6P46095 362 aaPredicted RBP8.52□□□□□ -1.05
ZNF540-208ENST00000589857 ZNF90Q03938 601 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 TPTE2P1Q5T6R2 138 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 WDR73Q6P4I2 378 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 PRSS57Q6UWY2 283 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 C1orf122Q6ZSJ8 110 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 C11orf42Q8N5U0 333 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 TMEM116Q8NCL8 245 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 OR5AU1Q8NGC0 362 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 OR2T6Q8NHC8 308 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 SGMS2Q8NHU3 365 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 OCC1Q8TAD7 63 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 DERL1Q9BUN8 251 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 TNFRSF19Q9NS68 423 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 DPM3Q9P2X0 92 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 TRAPPC1Q9Y5R8 145 aa8.52□□□□□ -1.05
ZNF540-208ENST00000589857 F11RQ9Y624 299 aaKnown RBP8.52□□□□□ -1.05
ZNF540-208ENST00000589857 LOC105371242A0A075B767 164 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 IGKV1OR2-108A0A075B7D4 117 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 ISLRO14498 428 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 HYPMO75409 117 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 FOXH1O75593 365 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 S100A7P31151 101 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 PDLIM4P50479 330 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 PLP1P60201 277 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 ERVFC1-1P60608 527 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 CENPWQ5EE01 88 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 OR11H6Q8NGC7 330 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 OR10D4PQ8NGN7 298 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 TMEM18Q96B42 140 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 MISP3Q96FF7 219 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 PACRGQ96M98 296 aaPredicted RBP8.51□□□□□ -1.05
ZNF540-208ENST00000589857 ELOVL1Q9BW60 279 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 SSBP3Q9BWW4 388 aaPredicted RBP8.51□□□□□ -1.05
ZNF540-208ENST00000589857 CDC42EP3Q9UKI2 254 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 DMRT1Q9Y5R6 373 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 KIAA2026Q5HYC2 2103 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 HCFC1P51610 2035 aa8.51□□□□□ -1.05
ZNF540-208ENST00000589857 PSMB11A5LHX3 300 aa8.5□□□□□ -1.05
ZNF540-208ENST00000589857 CGB1A6NKQ9 187 aa8.5□□□□□ -1.05
ZNF540-208ENST00000589857 PRTN3P24158 256 aa8.5□□□□□ -1.05
ZNF540-208ENST00000589857 COX7A1P24310 79 aa8.5□□□□□ -1.05
ZNF540-208ENST00000589857 CRYBB3P26998 211 aa8.5□□□□□ -1.05
ZNF540-208ENST00000589857 YPEL3P61236 119 aaPredicted RBP8.5□□□□□ -1.05
ZNF540-208ENST00000589857 DIAPH2-AS1Q14236 149 aa8.5□□□□□ -1.05
ZNF540-208ENST00000589857 DTX2Q86UW9 622 aa8.5□□□□□ -1.05
ZNF540-208ENST00000589857 TMEM37Q8WXS4 190 aa8.5□□□□□ -1.05
ZNF540-208ENST00000589857 RBM14Q96PK6 669 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms