RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 RPS10-NUDT3A0A1W2PQS6 291 aa15.01□□□□□ -0.01
SHMT1-209ENST00000582653 NOL3O60936 208 aaKnown RBP15.01□□□□□ -0.01
SHMT1-209ENST00000582653 AKR1C4P17516 323 aa15.01□□□□□ -0.01
SHMT1-209ENST00000582653 CRYBB3P26998 211 aa15.01□□□□□ -0.01
SHMT1-209ENST00000582653 RND2P52198 227 aa15.01□□□□□ -0.01
SHMT1-209ENST00000582653 RBMS2Q15434 407 aaKnown RBP15.01□□□□□ -0.01
SHMT1-209ENST00000582653 PRSS54Q6PEW0 395 aa15.01□□□□□ -0.01
SHMT1-209ENST00000582653 SLC24A4Q8NFF2 622 aa15.01□□□□□ -0.01
SHMT1-209ENST00000582653 MCFD2Q8NI22 146 aa15.01□□□□□ -0.01
SHMT1-209ENST00000582653 RARRES2Q99969 163 aa15.01□□□□□ -0.01
SHMT1-209ENST00000582653 TMEM231Q9H6L2 316 aa15.01□□□□□ -0.01
SHMT1-209ENST00000582653 TRAV30A0A087WSZ9 112 aa15□□□□□ -0.01
SHMT1-209ENST00000582653 A0A1W2PS18 150 aa15□□□□□ -0.01
SHMT1-209ENST00000582653 IGLC1P0CG04 106 aa15□□□□□ -0.01
SHMT1-209ENST00000582653 SULT1A3P0DMM9 295 aa15□□□□□ -0.01
SHMT1-209ENST00000582653 SULT1A4P0DMN0 295 aa15□□□□□ -0.01
SHMT1-209ENST00000582653 SUPT4H1P63272 117 aaKnown RBP15□□□□□ -0.01
SHMT1-209ENST00000582653 LYZL2Q7Z4W2 148 aa15□□□□□ -0.01
SHMT1-209ENST00000582653 IL22RA2Q969J5 263 aa15□□□□□ -0.01
SHMT1-209ENST00000582653 TRAV2A0A0B4J234 112 aa14.99□□□□□ -0.01
SHMT1-209ENST00000582653 SCGB2A1O75556 95 aa14.99□□□□□ -0.01
SHMT1-209ENST00000582653 P2RY1P47900 373 aa14.99□□□□□ -0.01
SHMT1-209ENST00000582653 NMSQ5H8A3 153 aa14.99□□□□□ -0.01
SHMT1-209ENST00000582653 STXBP6Q8NFX7 210 aa14.99□□□□□ -0.01
SHMT1-209ENST00000582653 RNASEH2CQ8TDP1 164 aaKnown RBP14.99□□□□□ -0.01
SHMT1-209ENST00000582653 PHLDA1Q8WV24 401 aaPredicted RBP14.99□□□□□ -0.01
SHMT1-209ENST00000582653 KMT2AQ03164 3969 aa14.99□□□□□ -0.01
SHMT1-209ENST00000582653 CA1P00915 261 aaPredicted RBP14.98□□□□□ -0.01
SHMT1-209ENST00000582653 SLC25A4P12235 298 aa14.98□□□□□ -0.01
SHMT1-209ENST00000582653 OR10J1P30954 320 aa14.98□□□□□ -0.01
SHMT1-209ENST00000582653 OR1S2Q8NGQ3 325 aa14.98□□□□□ -0.01
SHMT1-209ENST00000582653 Q8WTZ3 238 aa14.98□□□□□ -0.01
SHMT1-209ENST00000582653 NPIPB3Q92617 1050 aa14.98□□□□□ -0.01
SHMT1-209ENST00000582653 SCGB3A2Q96PL1 93 aa14.98□□□□□ -0.01
SHMT1-209ENST00000582653 K7EQG2 157 aa14.97□□□□□ -0.01
SHMT1-209ENST00000582653 NPY1RP25929 384 aa14.97□□□□□ -0.01
SHMT1-209ENST00000582653 OR11H2Q8NH07 326 aa14.97□□□□□ -0.01
SHMT1-209ENST00000582653 ACY3Q96HD9 319 aa14.97□□□□□ -0.01
SHMT1-209ENST00000582653 U3KQE9 123 aa14.97□□□□□ -0.01
SHMT1-209ENST00000582653 A0A0B4J2A0 478 aa14.96□□□□□ -0.01
SHMT1-209ENST00000582653 IFNA10P01566 189 aa14.96□□□□□ -0.01
SHMT1-209ENST00000582653 CCR6P51684 374 aa14.96□□□□□ -0.01
SHMT1-209ENST00000582653 YPEL3P61236 119 aaPredicted RBP14.96□□□□□ -0.01
SHMT1-209ENST00000582653 SMCO1Q147U7 214 aa14.96□□□□□ -0.01
SHMT1-209ENST00000582653 NARS2Q96I59 477 aaKnown RBP14.96□□□□□ -0.01
SHMT1-209ENST00000582653 RBKSQ9H477 322 aa14.96□□□□□ -0.01
SHMT1-209ENST00000582653 SHPKQ9UHJ6 478 aa14.96□□□□□ -0.01
SHMT1-209ENST00000582653 KNCNA6PVL3 124 aa14.95□□□□□ -0.02
SHMT1-209ENST00000582653 ZNF688P0C7X2 276 aa14.95□□□□□ -0.02
SHMT1-209ENST00000582653 KLF9Q13886 244 aaPredicted RBP14.95□□□□□ -0.02
SHMT1-209ENST00000582653 USF2Q15853 346 aaPredicted RBP14.95□□□□□ -0.02
SHMT1-209ENST00000582653 PYDC2Q56P42 97 aa14.95□□□□□ -0.02
SHMT1-209ENST00000582653 ETFRF1Q6IPR1 90 aa14.95□□□□□ -0.02
SHMT1-209ENST00000582653 STHQ8IWL8 128 aa14.95□□□□□ -0.02
SHMT1-209ENST00000582653 LGI3Q8N145 548 aa14.95□□□□□ -0.02
SHMT1-209ENST00000582653 DTD1Q8TEA8 209 aa14.95□□□□□ -0.02
SHMT1-209ENST00000582653 DCANP1Q8TF63 244 aa14.95□□□□□ -0.02
SHMT1-209ENST00000582653 GRAMD2BQ96HH9 432 aa14.95□□□□□ -0.02
SHMT1-209ENST00000582653 HSPB7Q9UBY9 170 aa14.95□□□□□ -0.02
SHMT1-209ENST00000582653 DEFB4AO15263 64 aa14.94□□□□□ -0.02
SHMT1-209ENST00000582653 IL4P05112 153 aa14.94□□□□□ -0.02
SHMT1-209ENST00000582653 HNRNPCP07910 306 aaKnown RBP eCLIP14.94□□□□□ -0.02
SHMT1-209ENST00000582653 C16orf54Q6UWD8 224 aa14.94□□□□□ -0.02
SHMT1-209ENST00000582653 TMED4Q7Z7H5 227 aa14.94□□□□□ -0.02
SHMT1-209ENST00000582653 C11orf45Q8TAV5 145 aa14.94□□□□□ -0.02
SHMT1-209ENST00000582653 TRIM63Q969Q1 353 aa14.94□□□□□ -0.02
SHMT1-209ENST00000582653 MFFQ9GZY8 342 aa14.94□□□□□ -0.02
SHMT1-209ENST00000582653 C11orf68Q9H3H3 251 aaKnown RBP14.94□□□□□ -0.02
SHMT1-209ENST00000582653 CACFD1Q9UGQ2 172 aa14.94□□□□□ -0.02
SHMT1-209ENST00000582653 ANXA3P12429 323 aa14.93□□□□□ -0.02
SHMT1-209ENST00000582653 DHRS2Q13268 280 aa14.93□□□□□ -0.02
SHMT1-209ENST00000582653 LGALS9CQ6DKI2 356 aa14.93□□□□□ -0.02
SHMT1-209ENST00000582653 NOXA1Q86UR1 476 aa14.93□□□□□ -0.02
SHMT1-209ENST00000582653 GLMPQ8WWB7 406 aa14.93□□□□□ -0.02
SHMT1-209ENST00000582653 U3KQ87 197 aa14.93□□□□□ -0.02
SHMT1-209ENST00000582653 V9GYH0 126 aa14.93□□□□□ -0.02
SHMT1-209ENST00000582653 CCDC160A6NGH7 325 aa14.92□□□□□ -0.02
SHMT1-209ENST00000582653 GIG44P09565 113 aaPredicted RBP14.92□□□□□ -0.02
SHMT1-209ENST00000582653 RD3LP0DJH9 198 aa14.92□□□□□ -0.02
SHMT1-209ENST00000582653 FAUP35544 74 aaKnown RBP14.92□□□□□ -0.02
SHMT1-209ENST00000582653 NANOS2P60321 138 aaKnown RBP14.92□□□□□ -0.02
SHMT1-209ENST00000582653 ZNF79Q15937 498 aa14.92□□□□□ -0.02
SHMT1-209ENST00000582653 TRPT1Q86TN4 253 aaKnown RBP14.92□□□□□ -0.02
SHMT1-209ENST00000582653 TOMM5Q8N4H5 51 aa14.92□□□□□ -0.02
SHMT1-209ENST00000582653 OR1S1Q8NH92 325 aa14.92□□□□□ -0.02
SHMT1-209ENST00000582653 FRAS1Q86XX4 4008 aa14.91□□□□□ -0.02
SHMT1-209ENST00000582653 TOMM40O96008 361 aa14.91□□□□□ -0.02
SHMT1-209ENST00000582653 IFNA4P05014 189 aa14.91□□□□□ -0.02
SHMT1-209ENST00000582653 PSG1P11464 419 aa14.91□□□□□ -0.02
SHMT1-209ENST00000582653 SRPXP78539 464 aa14.91□□□□□ -0.02
SHMT1-209ENST00000582653 HELTA6NFD8 242 aa14.9□□□□□ -0.02
SHMT1-209ENST00000582653 EIF2B2P49770 351 aaKnown RBP14.9□□□□□ -0.02
SHMT1-209ENST00000582653 TMEM128Q5BJH2 165 aa14.9□□□□□ -0.02
SHMT1-209ENST00000582653 ACTL10Q5JWF8 245 aa14.9□□□□□ -0.02
SHMT1-209ENST00000582653 OR51G1Q8NGK1 321 aa14.9□□□□□ -0.02
SHMT1-209ENST00000582653 FBXL17Q9UF56 701 aa14.9□□□□□ -0.02
SHMT1-209ENST00000582653 BUB3O43684 328 aa14.89□□□□□ -0.03
SHMT1-209ENST00000582653 C4BPBP20851 252 aa14.89□□□□□ -0.03
SHMT1-209ENST00000582653 VAMP1P23763 118 aa14.89□□□□□ -0.03
SHMT1-209ENST00000582653 AP2S1P53680 142 aaPredicted RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms