RNA–Protein interactions for RNA: ENST00000574099.1

CCDC40-211, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 537 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-211ENST00000574099 LPCAT3Q6P1A2 487 aa12.4□□□□□ -0.42
CCDC40-211ENST00000574099 SPARTQ8N0X7 666 aa12.4□□□□□ -0.42
CCDC40-211ENST00000574099 ATG101Q9BSB4 218 aa12.4□□□□□ -0.42
CCDC40-211ENST00000574099 YTHDF1Q9BYJ9 559 aaKnown RBP12.4□□□□□ -0.42
CCDC40-211ENST00000574099 ENY2Q9NPA8 101 aa12.4□□□□□ -0.42
CCDC40-211ENST00000574099 NRN1Q9NPD7 142 aa12.4□□□□□ -0.42
CCDC40-211ENST00000574099 HERC1Q15751 4861 aa12.4□□□□□ -0.42
CCDC40-211ENST00000574099 A0A0B4J293 547 aa12.39□□□□□ -0.43
CCDC40-211ENST00000574099 INS-IGF2F8WCM5 200 aa12.39□□□□□ -0.43
CCDC40-211ENST00000574099 GABARAPL2P60520 117 aa12.39□□□□□ -0.43
CCDC40-211ENST00000574099 USF2Q15853 346 aaPredicted RBP12.39□□□□□ -0.43
CCDC40-211ENST00000574099 IZUMO2Q6UXV1 221 aa12.39□□□□□ -0.43
CCDC40-211ENST00000574099 SIGLEC15Q6ZMC9 328 aa12.39□□□□□ -0.43
CCDC40-211ENST00000574099 LYSMD2Q8IV50 215 aa12.39□□□□□ -0.43
CCDC40-211ENST00000574099 C6orf223Q8N319 242 aa12.39□□□□□ -0.43
CCDC40-211ENST00000574099 S100A16Q96FQ6 103 aaKnown RBP12.39□□□□□ -0.43
CCDC40-211ENST00000574099 YTHDF2Q9Y5A9 579 aaKnown RBP12.39□□□□□ -0.43
CCDC40-211ENST00000574099 TRAV30A0A087WSZ9 112 aa12.38□□□□□ -0.43
CCDC40-211ENST00000574099 NBDYA0A0U1RRE5 68 aa12.38□□□□□ -0.43
CCDC40-211ENST00000574099 IGLC1P0CG04 106 aa12.38□□□□□ -0.43
CCDC40-211ENST00000574099 DHODHQ02127 395 aa12.38□□□□□ -0.43
CCDC40-211ENST00000574099 Q8WTZ3 238 aa12.38□□□□□ -0.43
CCDC40-211ENST00000574099 LOC102723971A0A1B0GUV8 181 aa12.37□□□□□ -0.43
CCDC40-211ENST00000574099 IL4P05112 153 aa12.37□□□□□ -0.43
CCDC40-211ENST00000574099 NKX2-1P43699 371 aaPredicted RBP12.37□□□□□ -0.43
CCDC40-211ENST00000574099 RND2P52198 227 aa12.37□□□□□ -0.43
CCDC40-211ENST00000574099 DAD1P61803 113 aa12.37□□□□□ -0.43
CCDC40-211ENST00000574099 UBE2NLQ5JXB2 153 aa12.37□□□□□ -0.43
CCDC40-211ENST00000574099 OR4B1Q8NGF8 309 aa12.37□□□□□ -0.43
CCDC40-211ENST00000574099 OR1S2Q8NGQ3 325 aa12.37□□□□□ -0.43
CCDC40-211ENST00000574099 FCGR1BQ92637 280 aa12.37□□□□□ -0.43
CCDC40-211ENST00000574099 LINC00052Q96N35 136 aa12.37□□□□□ -0.43
CCDC40-211ENST00000574099 SLC35B3Q9H1N7 401 aa12.37□□□□□ -0.43
CCDC40-211ENST00000574099 HBE1P02100 147 aa12.36□□□□□ -0.43
CCDC40-211ENST00000574099 P0C879 139 aa12.36□□□□□ -0.43
CCDC40-211ENST00000574099 PI3P19957 117 aa12.36□□□□□ -0.43
CCDC40-211ENST00000574099 OR10J1P30954 320 aa12.36□□□□□ -0.43
CCDC40-211ENST00000574099 PRSS3P35030 304 aa12.36□□□□□ -0.43
CCDC40-211ENST00000574099 RPL5P46777 297 aaKnown RBP12.36□□□□□ -0.43
CCDC40-211ENST00000574099 FAM3BP58499 235 aaPredicted RBP12.36□□□□□ -0.43
CCDC40-211ENST00000574099 OXA1LQ15070 435 aa12.36□□□□□ -0.43
CCDC40-211ENST00000574099 GSG1LQ6UXU4 331 aa12.36□□□□□ -0.43
CCDC40-211ENST00000574099 SPATA12Q7Z6I5 190 aa12.36□□□□□ -0.43
CCDC40-211ENST00000574099 ZNF709Q8N972 641 aa12.36□□□□□ -0.43
CCDC40-211ENST00000574099 C15orf53Q8NAA6 179 aa12.36□□□□□ -0.43
CCDC40-211ENST00000574099 TP53RKQ96S44 253 aa12.36□□□□□ -0.43
CCDC40-211ENST00000574099 C7orf50Q9BRJ6 194 aaKnown RBP12.36□□□□□ -0.43
CCDC40-211ENST00000574099 SEPSECSQ9HD40 501 aaKnown RBP12.36□□□□□ -0.43
CCDC40-211ENST00000574099 RPS10-NUDT3A0A1W2PQS6 291 aa12.35□□□□□ -0.43
CCDC40-211ENST00000574099 PGAM2P15259 253 aa12.35□□□□□ -0.43
CCDC40-211ENST00000574099 PRSS54Q6PEW0 395 aa12.35□□□□□ -0.43
CCDC40-211ENST00000574099 SAMD12Q8N8I0 201 aa12.35□□□□□ -0.43
CCDC40-211ENST00000574099 ZNRF2Q8NHG8 242 aa12.35□□□□□ -0.43
CCDC40-211ENST00000574099 SAV1Q9H4B6 383 aaPredicted RBP12.35□□□□□ -0.43
CCDC40-211ENST00000574099 GOLT1BQ9Y3E0 138 aa12.35□□□□□ -0.43
CCDC40-211ENST00000574099 A0A0G2JRQ6 117 aa12.34□□□□□ -0.43
CCDC40-211ENST00000574099 BUB3O43684 328 aa12.34□□□□□ -0.43
CCDC40-211ENST00000574099 TGFBR1P36897 503 aa12.34□□□□□ -0.43
CCDC40-211ENST00000574099 UCP3P55916 312 aa12.34□□□□□ -0.43
CCDC40-211ENST00000574099 YPEL3P61236 119 aaPredicted RBP12.34□□□□□ -0.43
CCDC40-211ENST00000574099 BSXQ3C1V8 233 aa12.34□□□□□ -0.43
CCDC40-211ENST00000574099 C1orf158Q8N1D5 194 aa12.34□□□□□ -0.43
CCDC40-211ENST00000574099 RNASE11Q8TAA1 199 aaKnown RBP12.34□□□□□ -0.43
CCDC40-211ENST00000574099 WDR12Q9GZL7 423 aaKnown RBP12.34□□□□□ -0.43
CCDC40-211ENST00000574099 GSTZ1O43708 216 aaPredicted RBP12.33□□□□□ -0.44
CCDC40-211ENST00000574099 RORCP51449 518 aa12.33□□□□□ -0.44
CCDC40-211ENST00000574099 RRN3P1Q2M238 152 aa12.33□□□□□ -0.44
CCDC40-211ENST00000574099 TRIM16LQ309B1 348 aa12.33□□□□□ -0.44
CCDC40-211ENST00000574099 FOXI2Q6ZQN5 318 aa12.33□□□□□ -0.44
CCDC40-211ENST00000574099 COQ8AQ8NI60 647 aa12.33□□□□□ -0.44
CCDC40-211ENST00000574099 VCX3BQ9H321 246 aa12.33□□□□□ -0.44
CCDC40-211ENST00000574099 DNAH5Q8TE73 4624 aa12.32□□□□□ -0.44
CCDC40-211ENST00000574099 F6UB75 175 aa12.32□□□□□ -0.44
CCDC40-211ENST00000574099 M0QYG6 137 aa12.32□□□□□ -0.44
CCDC40-211ENST00000574099 NUDT3O95989 172 aa12.32□□□□□ -0.44
CCDC40-211ENST00000574099 PIGPP57054 158 aa12.32□□□□□ -0.44
CCDC40-211ENST00000574099 SP6Q3SY56 376 aa12.32□□□□□ -0.44
CCDC40-211ENST00000574099 OR51G1Q8NGK1 321 aa12.32□□□□□ -0.44
CCDC40-211ENST00000574099 GPX8Q8TED1 209 aa12.32□□□□□ -0.44
CCDC40-211ENST00000574099 C3orf85A0A1B0GTC6 90 aa12.31□□□□□ -0.44
CCDC40-211ENST00000574099 ATG12O94817 140 aa12.31□□□□□ -0.44
CCDC40-211ENST00000574099 TOMM40O96008 361 aa12.31□□□□□ -0.44
CCDC40-211ENST00000574099 SLC25A4P12235 298 aa12.31□□□□□ -0.44
CCDC40-211ENST00000574099 HTR2BP41595 481 aa12.31□□□□□ -0.44
CCDC40-211ENST00000574099 RND3P61587 244 aa12.31□□□□□ -0.44
CCDC40-211ENST00000574099 PSG9Q00887 426 aa12.31□□□□□ -0.44
CCDC40-211ENST00000574099 SNX29P2Q8IUI4 249 aa12.31□□□□□ -0.44
CCDC40-211ENST00000574099 NPIPB3Q92617 1050 aa12.31□□□□□ -0.44
CCDC40-211ENST00000574099 RRNAD1Q96FB5 475 aaKnown RBP12.31□□□□□ -0.44
CCDC40-211ENST00000574099 ACY3Q96HD9 319 aa12.31□□□□□ -0.44
CCDC40-211ENST00000574099 PBDC1Q9BVG4 233 aa12.31□□□□□ -0.44
CCDC40-211ENST00000574099 MAGT1Q9H0U3 335 aa12.31□□□□□ -0.44
CCDC40-211ENST00000574099 SCPEP1Q9HB40 452 aa12.31□□□□□ -0.44
CCDC40-211ENST00000574099 NXPH3O95157 252 aa12.3□□□□□ -0.44
CCDC40-211ENST00000574099 PRM2P04554 102 aa12.3□□□□□ -0.44
CCDC40-211ENST00000574099 RD3LP0DJH9 198 aa12.3□□□□□ -0.44
CCDC40-211ENST00000574099 RCVRNP35243 200 aa12.3□□□□□ -0.44
CCDC40-211ENST00000574099 ZNF79Q15937 498 aa12.3□□□□□ -0.44
CCDC40-211ENST00000574099 FAM78BQ5VT40 261 aa12.3□□□□□ -0.44
CCDC40-211ENST00000574099 TMEM208Q9BTX3 173 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms