RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 COLQQ9Y215 455 aaPredicted RBP9.4□□□□□ -0.9
CLN3-238ENST00000569430 A0A1W2PRE2 83 aa9.4□□□□□ -0.9
CLN3-238ENST00000569430 SELENOTP62341 195 aa9.4□□□□□ -0.9
CLN3-238ENST00000569430 C10orf55Q5SWW7 151 aa9.4□□□□□ -0.9
CLN3-238ENST00000569430 TMEM136Q6ZRR5 245 aa9.4□□□□□ -0.9
CLN3-238ENST00000569430 NUP35Q8NFH5 326 aa9.4□□□□□ -0.9
CLN3-238ENST00000569430 C18orf32Q8TCD1 76 aa9.4□□□□□ -0.9
CLN3-238ENST00000569430 MEGF9Q9H1U4 602 aa9.4□□□□□ -0.9
CLN3-238ENST00000569430 V9GYV3 84 aa9.4□□□□□ -0.9
CLN3-238ENST00000569430 BDP1A6H8Y1 2624 aa9.4□□□□□ -0.91
CLN3-238ENST00000569430 IGLL1P15814 213 aa9.4□□□□□ -0.91
CLN3-238ENST00000569430 TNFRSF1AP19438 455 aa9.4□□□□□ -0.91
CLN3-238ENST00000569430 CEACAM8P31997 349 aaPredicted RBP9.4□□□□□ -0.91
CLN3-238ENST00000569430 LRRC10Q5BKY1 277 aa9.4□□□□□ -0.91
CLN3-238ENST00000569430 ATG2AQ2TAZ0 1938 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 GUCD1Q96NT3 240 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 C19orf24Q9BVV8 132 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 GPR183P32249 361 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 C18orf15Q96N68 181 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 CDX2Q99626 313 aaPredicted RBP9.39□□□□□ -0.91
CLN3-238ENST00000569430 RASL11BQ9BPW5 248 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 THYN1Q9P016 225 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 C7orf71A4D174 169 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 OR2T8A6NH00 312 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 S100A7AQ86SG5 101 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 CD177Q8N6Q3 437 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 Q8NFD4 153 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 OR10AG1Q8NH19 301 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 IDI2-AS1Q9NZ38 188 aa9.39□□□□□ -0.91
CLN3-238ENST00000569430 SLC25A10Q9UBX3 287 aaPredicted RBP9.39□□□□□ -0.91
CLN3-238ENST00000569430 TRAV17A0A0B4J275 112 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 ORM1P02763 201 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 SAA1P0DJI8 122 aaPredicted RBP9.38□□□□□ -0.91
CLN3-238ENST00000569430 PRB3Q04118 309 aaPredicted RBP9.38□□□□□ -0.91
CLN3-238ENST00000569430 Q6ZSR3 168 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 MRPL52Q86TS9 123 aaKnown RBP9.38□□□□□ -0.91
CLN3-238ENST00000569430 GCSAMQ8N6F7 178 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 GPR82Q96P67 336 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 MRPL32Q9BYC8 188 aaKnown RBP9.38□□□□□ -0.91
CLN3-238ENST00000569430 RPP21Q9H633 154 aaKnown RBP9.38□□□□□ -0.91
CLN3-238ENST00000569430 ZGRF1Q86YA3 2104 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 IGHV1-69-2A0A0G2JMI3 117 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 YPEL1O60688 119 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 SCGB2A1O75556 95 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 ACP1P24666 158 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 Q6ZT83 130 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 PNKDQ8N490 385 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 YPEL2Q96QA6 119 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 HIGD1AQ9Y241 93 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 COL6A6A6NMZ7 2263 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 PCNX2A6NKB5 2137 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 CENPVQ7Z7K6 275 aaPredicted RBP9.38□□□□□ -0.91
CLN3-238ENST00000569430 OR52E5Q8NH55 327 aa9.38□□□□□ -0.91
CLN3-238ENST00000569430 FABP2P12104 132 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 ZADH2Q8N4Q0 377 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 TMEM105Q8N8V8 129 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 FAM168AQ92567 244 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 SLC25A33Q9BSK2 321 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 ZNRD1Q9P1U0 126 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 TMEM131Q92545 1883 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 GGTLC3B5MD39 225 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 WNT2P09544 360 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 CKS2P33552 79 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 RPL27AP46776 148 aaKnown RBP9.37□□□□□ -0.91
CLN3-238ENST00000569430 FXYD7P58549 80 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 CD69Q07108 199 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 RPEQ96AT9 228 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.37□□□□□ -0.917e-9■■□□□ 13.5
CLN3-238ENST00000569430 MALRD1Q5VYJ5 2156 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 KBTBD11-OT1A0A1B0GTJ5 212 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 UPK2O00526 184 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 ZNF207O43670 478 aaKnown RBP9.37□□□□□ -0.91
CLN3-238ENST00000569430 RNF138Q8WVD3 245 aa9.37□□□□□ -0.91
CLN3-238ENST00000569430 MRPL20Q9BYC9 149 aaKnown RBP9.37□□□□□ -0.91
CLN3-238ENST00000569430 TRAV8-1A0A0A6YYK1 113 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 C21orf140B9A014 251 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 IGLV2-14P01704 120 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 ZCCHC24Q8N2G6 241 aaKnown RBP9.36□□□□□ -0.91
CLN3-238ENST00000569430 KIR3DL3Q8N743 410 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 EPDR1Q9UM22 224 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 MRPS16Q9Y3D3 137 aaKnown RBP9.36□□□□□ -0.91
CLN3-238ENST00000569430 INSIG2Q9Y5U4 225 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 S4R3C0 116 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 NUP210LQ5VU65 1888 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 J3QW42 95 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 M0R296 226 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 CCL3L1P16619 93 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 ASCL2Q99929 193 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 NDFIP1Q9BT67 221 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 CHODLQ9H9P2 273 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 MRPS18CQ9Y3D5 142 aaKnown RBP9.36□□□□□ -0.91
CLN3-238ENST00000569430 DOPEY2Q9Y3R5 2298 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 GAGE12BA1L429 117 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 A1L4Q6 167 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 NKX2-8O15522 239 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 RBPMS2Q6ZRY4 209 aaKnown RBP9.36□□□□□ -0.91
CLN3-238ENST00000569430 SPACA3Q8IXA5 215 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 SMIM12Q96EX1 92 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 ST20Q9HBF5 79 aa9.36□□□□□ -0.91
CLN3-238ENST00000569430 LSM4Q9Y4Z0 139 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms