RNA–Protein interactions for RNA: ENST00000569390.1

NEIL1-222, Transcript of nei like DNA glycosylase 1, human

TSL 3

Gene NEIL1, Length 346 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEIL1-222	ENST00000569390	CCDC190	Q86UF4	302 aa		13.86	□□□□□ -0.19
NEIL1-222	ENST00000569390	RBM38	Q9H0Z9	239 aa	Known RBP	13.86	□□□□□ -0.19
NEIL1-222	ENST00000569390	HSPB7	Q9UBY9	170 aa		13.86	□□□□□ -0.19
NEIL1-222	ENST00000569390	IGKV3-7	A0A075B6H7	116 aa		13.85	□□□□□ -0.19
NEIL1-222	ENST00000569390	DNASE2	O00115	360 aa	Predicted RBP	13.85	□□□□□ -0.19
NEIL1-222	ENST00000569390	CRYBB3	P26998	211 aa		13.85	□□□□□ -0.19
NEIL1-222	ENST00000569390	RND2	P52198	227 aa		13.85	□□□□□ -0.19
NEIL1-222	ENST00000569390	YPEL3	P61236	119 aa	Predicted RBP	13.85	□□□□□ -0.19
NEIL1-222	ENST00000569390	ZNF79	Q15937	498 aa		13.85	□□□□□ -0.19
NEIL1-222	ENST00000569390	SPANXN2	Q5MJ10	180 aa		13.85	□□□□□ -0.19
NEIL1-222	ENST00000569390	LYZL2	Q7Z4W2	148 aa		13.85	□□□□□ -0.19
NEIL1-222	ENST00000569390		Q8WTZ3	238 aa		13.85	□□□□□ -0.19
NEIL1-222	ENST00000569390	GRAMD2B	Q96HH9	432 aa		13.85	□□□□□ -0.19
NEIL1-222	ENST00000569390	MAP6D1	Q9H9H5	199 aa		13.85	□□□□□ -0.19
NEIL1-222	ENST00000569390	CSMD3	Q7Z407	3707 aa		13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	IFNA10	P01566	189 aa		13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	APOH	P02749	345 aa	Predicted RBP	13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	IGLC1	P0CG04	106 aa		13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	OR10J1	P30954	320 aa		13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	RPL11	P62913	178 aa	Known RBP	13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	DEFB135	Q30KP9	77 aa		13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	TIGIT	Q495A1	244 aa		13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	TMED4	Q7Z7H5	227 aa		13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	APRG1	Q8IVJ8	170 aa		13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	GBGT1	Q8N5D6	347 aa		13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	DTD1	Q8TEA8	209 aa		13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	RNF183	Q96D59	192 aa		13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	MS4A6A	Q9H2W1	248 aa		13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	PRR13	Q9NZ81	148 aa		13.84	□□□□□ -0.19
NEIL1-222	ENST00000569390	STARD9	Q9P2P6	4700 aa		13.83	□□□□□ -0.2
NEIL1-222	ENST00000569390	RPL35A	P18077	110 aa	Known RBP	13.83	□□□□□ -0.2
NEIL1-222	ENST00000569390	EIF2B2	P49770	351 aa	Known RBP	13.83	□□□□□ -0.2
NEIL1-222	ENST00000569390	LRTM2	Q8N967	370 aa		13.83	□□□□□ -0.2
NEIL1-222	ENST00000569390	OR1S1	Q8NH92	325 aa		13.83	□□□□□ -0.2
NEIL1-222	ENST00000569390	TMEM170A	Q8WVE7	144 aa		13.83	□□□□□ -0.2
NEIL1-222	ENST00000569390	SACS	Q9NZJ4	4579 aa		13.83	□□□□□ -0.2
NEIL1-222	ENST00000569390	IGHV3-66	A0A0C4DH42	116 aa		13.82	□□□□□ -0.2
NEIL1-222	ENST00000569390	NXPH3	O95157	252 aa		13.82	□□□□□ -0.2
NEIL1-222	ENST00000569390	SLC25A6	P12236	298 aa		13.82	□□□□□ -0.2
NEIL1-222	ENST00000569390	P2RY1	P47900	373 aa		13.82	□□□□□ -0.2
NEIL1-222	ENST00000569390	LILRB2	Q8N423	598 aa		13.82	□□□□□ -0.2
NEIL1-222	ENST00000569390	CSTL1	Q9H114	145 aa		13.82	□□□□□ -0.2
NEIL1-222	ENST00000569390	HELT	A6NFD8	242 aa		13.81	□□□□□ -0.2
NEIL1-222	ENST00000569390	MPTX1	A8MV57	137 aa		13.81	□□□□□ -0.2
NEIL1-222	ENST00000569390	JTB	O76095	146 aa		13.81	□□□□□ -0.2
NEIL1-222	ENST00000569390	ATF4	P18848	351 aa	Predicted RBP	13.81	□□□□□ -0.2
NEIL1-222	ENST00000569390	VAMP1	P23763	118 aa		13.81	□□□□□ -0.2
NEIL1-222	ENST00000569390	TMEM217	Q8N7C4	229 aa		13.81	□□□□□ -0.2
NEIL1-222	ENST00000569390	RBKS	Q9H477	322 aa		13.81	□□□□□ -0.2
NEIL1-222	ENST00000569390	RABAC1	Q9UI14	185 aa		13.81	□□□□□ -0.2
NEIL1-222	ENST00000569390	TMED3	Q9Y3Q3	217 aa		13.81	□□□□□ -0.2
NEIL1-222	ENST00000569390	FAM90A26	D6RGX4	464 aa		13.8	□□□□□ -0.2
NEIL1-222	ENST00000569390	IFNA4	P05014	189 aa		13.8	□□□□□ -0.2
NEIL1-222	ENST00000569390	HNRNPC	P07910	306 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
NEIL1-222	ENST00000569390	INPP1	P49441	399 aa		13.8	□□□□□ -0.2
NEIL1-222	ENST00000569390	AP2S1	P53680	142 aa	Predicted RBP	13.8	□□□□□ -0.2
NEIL1-222	ENST00000569390	UBE2M	P61081	183 aa	Known RBP	13.8	□□□□□ -0.2
NEIL1-222	ENST00000569390	RBMS2	Q15434	407 aa	Known RBP	13.8	□□□□□ -0.2
NEIL1-222	ENST00000569390	LYG2	Q86SG7	212 aa		13.8	□□□□□ -0.2
NEIL1-222	ENST00000569390	CENPS	Q8N2Z9	138 aa		13.8	□□□□□ -0.2
NEIL1-222	ENST00000569390	GATAD1	Q8WUU5	269 aa		13.8	□□□□□ -0.2
NEIL1-222	ENST00000569390	NPIPB3	Q92617	1050 aa		13.8	□□□□□ -0.2
NEIL1-222	ENST00000569390	ACY3	Q96HD9	319 aa		13.8	□□□□□ -0.2
NEIL1-222	ENST00000569390		U3KQE9	123 aa		13.8	□□□□□ -0.2
NEIL1-222	ENST00000569390	NAP1L6	A6NFF2	107 aa		13.79	□□□□□ -0.2
NEIL1-222	ENST00000569390	PITX3	O75364	302 aa		13.79	□□□□□ -0.2
NEIL1-222	ENST00000569390	MED6	O75586	246 aa		13.79	□□□□□ -0.2
NEIL1-222	ENST00000569390	TOMM40	O96008	361 aa		13.79	□□□□□ -0.2
NEIL1-222	ENST00000569390	RD3L	P0DJH9	198 aa		13.79	□□□□□ -0.2
NEIL1-222	ENST00000569390	GPX4	P36969	197 aa	Predicted RBP	13.79	□□□□□ -0.2
NEIL1-222	ENST00000569390	DEFB131A	P59861	70 aa		13.79	□□□□□ -0.2
NEIL1-222	ENST00000569390	STXBP6	Q8NFX7	210 aa		13.79	□□□□□ -0.2
NEIL1-222	ENST00000569390	SRR	Q9GZT4	340 aa		13.79	□□□□□ -0.2
NEIL1-222	ENST00000569390		A0A0J9YWU9	116 aa		13.78	□□□□□ -0.2
NEIL1-222	ENST00000569390		K7EQG2	157 aa		13.78	□□□□□ -0.2
NEIL1-222	ENST00000569390	SFT2D2	O95562	160 aa		13.78	□□□□□ -0.2
NEIL1-222	ENST00000569390	IL4	P05112	153 aa		13.78	□□□□□ -0.2
NEIL1-222	ENST00000569390	NUP62	P37198	522 aa	Predicted RBP	13.78	□□□□□ -0.2
NEIL1-222	ENST00000569390	ZNF124	Q15973	351 aa		13.78	□□□□□ -0.2
NEIL1-222	ENST00000569390	TRIQK	Q629K1	86 aa		13.78	□□□□□ -0.2
NEIL1-222	ENST00000569390	CIB3	Q96Q77	187 aa	Predicted RBP	13.78	□□□□□ -0.2
NEIL1-222	ENST00000569390	PFDN2	Q9UHV9	154 aa		13.78	□□□□□ -0.2
NEIL1-222	ENST00000569390	FABP1	P07148	127 aa		13.77	□□□□□ -0.21
NEIL1-222	ENST00000569390	RAB11A	P62491	216 aa		13.77	□□□□□ -0.21
NEIL1-222	ENST00000569390	PPP1R1A	Q13522	171 aa		13.77	□□□□□ -0.21
NEIL1-222	ENST00000569390	RYR2	Q92736	4967 aa		13.77	□□□□□ -0.21
NEIL1-222	ENST00000569390	SLC35E1	Q96K37	410 aa		13.77	□□□□□ -0.21
NEIL1-222	ENST00000569390	RPP30	P78346	268 aa	Known RBP	13.76	□□□□□ -0.21
NEIL1-222	ENST00000569390	USF2	Q15853	346 aa	Predicted RBP	13.76	□□□□□ -0.21
NEIL1-222	ENST00000569390	C16orf54	Q6UWD8	224 aa		13.76	□□□□□ -0.21
NEIL1-222	ENST00000569390	STH	Q8IWL8	128 aa		13.76	□□□□□ -0.21
NEIL1-222	ENST00000569390	OR51G1	Q8NGK1	321 aa		13.76	□□□□□ -0.21
NEIL1-222	ENST00000569390	DCANP1	Q8TF63	244 aa		13.76	□□□□□ -0.21
NEIL1-222	ENST00000569390	GLMP	Q8WWB7	406 aa		13.76	□□□□□ -0.21
NEIL1-222	ENST00000569390	ZFP92	A6NM28	416 aa		13.75	□□□□□ -0.21
NEIL1-222	ENST00000569390	PSG1	P11464	419 aa		13.75	□□□□□ -0.21
NEIL1-222	ENST00000569390	TMEM41B	Q5BJD5	291 aa		13.75	□□□□□ -0.21
NEIL1-222	ENST00000569390	LEMD1	Q68G75	181 aa		13.75	□□□□□ -0.21
NEIL1-222	ENST00000569390	FAM24B	Q8N5W8	94 aa		13.75	□□□□□ -0.21
NEIL1-222	ENST00000569390	CXorf65	A6NEN9	183 aa		13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms