RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 YPEL3P61236 119 aaPredicted RBP13.92□□□□□ -0.18
CLN3-227ENST00000567495 PPP1R1AQ13522 171 aa13.92□□□□□ -0.18
CLN3-227ENST00000567495 BAK1Q16611 211 aa13.92□□□□□ -0.18
CLN3-227ENST00000567495 ODF3L2Q3SX64 289 aa13.92□□□□□ -0.18
CLN3-227ENST00000567495 TCF24Q7RTU0 167 aa13.92□□□□□ -0.18
CLN3-227ENST00000567495 Q8WTZ3 238 aa13.92□□□□□ -0.18
CLN3-227ENST00000567495 TMEM170AQ8WVE7 144 aa13.92□□□□□ -0.18
CLN3-227ENST00000567495 C7orf50Q9BRJ6 194 aaKnown RBP13.92□□□□□ -0.18
CLN3-227ENST00000567495 RBKSQ9H477 322 aa13.92□□□□□ -0.18
CLN3-227ENST00000567495 IGHV3OR16-13A0A075B7E8 117 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 IGHV3-74A0A0B4J1X5 117 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 TRAV2A0A0B4J234 112 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 KIR2DL5BA0A0G2JN68 375 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 KIR2DL5BA0A0G2JPC4 375 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 MED6O75586 246 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 NDUFB6O95139 128 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 NXPH3O95157 252 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 IGLC1P0CG04 106 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 CRYBB3P26998 211 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 TIGITQ495A1 244 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 CASC10Q5T4H9 136 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 KIR2DL5AQ8N109 375 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 KIR2DL5BQ8NHK3 375 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 IL17DQ8TAD2 202 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 ST8SIA2Q92186 375 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 UBQLN2Q9UHD9 624 aa13.91□□□□□ -0.18
CLN3-227ENST00000567495 IFNA4P05014 189 aa13.9□□□□□ -0.18
CLN3-227ENST00000567495 CNPY1Q3B7I2 92 aa13.9□□□□□ -0.18
CLN3-227ENST00000567495 GRAMD2BQ96HH9 432 aa13.9□□□□□ -0.18
CLN3-227ENST00000567495 CIB3Q96Q77 187 aaPredicted RBP13.9□□□□□ -0.18
CLN3-227ENST00000567495 RETNQ9HD89 108 aa13.9□□□□□ -0.18
CLN3-227ENST00000567495 DNASE2O00115 360 aaPredicted RBP13.89□□□□□ -0.19
CLN3-227ENST00000567495 DFFBO76075 338 aa13.89□□□□□ -0.19
CLN3-227ENST00000567495 GPX4P36969 197 aaPredicted RBP13.89□□□□□ -0.19
CLN3-227ENST00000567495 RPL11P62913 178 aaKnown RBP13.89□□□□□ -0.19
CLN3-227ENST00000567495 Q6ZWC4 215 aa13.89□□□□□ -0.19
CLN3-227ENST00000567495 NPIPB3Q92617 1050 aa13.89□□□□□ -0.19
CLN3-227ENST00000567495 SDHCQ99643 169 aaPredicted RBP13.89□□□□□ -0.19
CLN3-227ENST00000567495 TP53TG1Q9Y2A0 90 aa13.89□□□□□ -0.19
CLN3-227ENST00000567495 APOHP02749 345 aaPredicted RBP13.88□□□□□ -0.19
CLN3-227ENST00000567495 TFPI2P48307 235 aa13.88□□□□□ -0.19
CLN3-227ENST00000567495 EIF2B2P49770 351 aaKnown RBP13.88□□□□□ -0.19
CLN3-227ENST00000567495 RAB11AP62491 216 aa13.88□□□□□ -0.19
CLN3-227ENST00000567495 RPP30P78346 268 aaKnown RBP13.88□□□□□ -0.19
CLN3-227ENST00000567495 STPG3Q8N7X2 389 aa13.88□□□□□ -0.19
CLN3-227ENST00000567495 ACY3Q96HD9 319 aa13.88□□□□□ -0.19
CLN3-227ENST00000567495 IGKV3-7A0A075B6H7 116 aa13.87□□□□□ -0.19
CLN3-227ENST00000567495 C9orf170A2RU37 121 aa13.87□□□□□ -0.19
CLN3-227ENST00000567495 RD3LP0DJH9 198 aa13.87□□□□□ -0.19
CLN3-227ENST00000567495 IL7P13232 177 aa13.87□□□□□ -0.19
CLN3-227ENST00000567495 LILRB2Q8N423 598 aa13.87□□□□□ -0.19
CLN3-227ENST00000567495 GBGT1Q8N5D6 347 aa13.87□□□□□ -0.19
CLN3-227ENST00000567495 COQ8AQ8NI60 647 aa13.87□□□□□ -0.19
CLN3-227ENST00000567495 OVOL2Q9BRP0 275 aa13.87□□□□□ -0.19
CLN3-227ENST00000567495 MS4A6AQ9H2W1 248 aa13.87□□□□□ -0.19
CLN3-227ENST00000567495 KMT2CQ8NEZ4 4911 aaKnown RBP13.87□□□□□ -0.19
CLN3-227ENST00000567495 IGHV3-66A0A0C4DH42 116 aa13.86□□□□□ -0.19
CLN3-227ENST00000567495 TOMM40O96008 361 aa13.86□□□□□ -0.19
CLN3-227ENST00000567495 FABP1P07148 127 aa13.86□□□□□ -0.19
CLN3-227ENST00000567495 P2RY1P47900 373 aa13.86□□□□□ -0.19
CLN3-227ENST00000567495 AP2S1P53680 142 aaPredicted RBP13.86□□□□□ -0.19
CLN3-227ENST00000567495 SLC35E1Q96K37 410 aa13.86□□□□□ -0.19
CLN3-227ENST00000567495 PFDN2Q9UHV9 154 aa13.86□□□□□ -0.19
CLN3-227ENST00000567495 U3KQE9 123 aa13.86□□□□□ -0.19
CLN3-227ENST00000567495 LINC00854A0A1B0GVQ3 168 aa13.85□□□□□ -0.19
CLN3-227ENST00000567495 HELTA6NFD8 242 aa13.85□□□□□ -0.19
CLN3-227ENST00000567495 HNRNPCP07910 306 aaKnown RBP eCLIP13.85□□□□□ -0.19
CLN3-227ENST00000567495 HOXB5P09067 269 aa13.85□□□□□ -0.19
CLN3-227ENST00000567495 NUP62P37198 522 aaPredicted RBP13.85□□□□□ -0.19
CLN3-227ENST00000567495 GGNBP1Q5YKI7 109 aa13.85□□□□□ -0.19
CLN3-227ENST00000567495 LINC00299Q6ZSB3 139 aa13.85□□□□□ -0.19
CLN3-227ENST00000567495 MAP6D1Q9H9H5 199 aa13.85□□□□□ -0.19
CLN3-227ENST00000567495 SPRY2O43597 315 aa13.84□□□□□ -0.19
CLN3-227ENST00000567495 SYNGR2O43760 224 aa13.84□□□□□ -0.19
CLN3-227ENST00000567495 IFNA21P01568 189 aa13.84□□□□□ -0.19
CLN3-227ENST00000567495 IL4P05112 153 aa13.84□□□□□ -0.19
CLN3-227ENST00000567495 DHRS2Q13268 280 aa13.84□□□□□ -0.19
CLN3-227ENST00000567495 C4orf46Q504U0 113 aa13.84□□□□□ -0.19
CLN3-227ENST00000567495 LYG2Q86SG7 212 aa13.84□□□□□ -0.19
CLN3-227ENST00000567495 WFDC3Q8IUB2 231 aa13.84□□□□□ -0.19
CLN3-227ENST00000567495 APRG1Q8IVJ8 170 aa13.84□□□□□ -0.19
CLN3-227ENST00000567495 RABAC1Q9UI14 185 aa13.84□□□□□ -0.19
CLN3-227ENST00000567495 ZFP92A6NM28 416 aa13.83□□□□□ -0.2
CLN3-227ENST00000567495 OR4E1P0C645 316 aa13.83□□□□□ -0.2
CLN3-227ENST00000567495 IAPPP10997 89 aa13.83□□□□□ -0.2
CLN3-227ENST00000567495 PSG1P11464 419 aa13.83□□□□□ -0.2
CLN3-227ENST00000567495 RPL35AP18077 110 aaKnown RBP13.83□□□□□ -0.2
CLN3-227ENST00000567495 GAMTQ14353 236 aa13.83□□□□□ -0.2
CLN3-227ENST00000567495 OR51G1Q8NGK1 321 aa13.83□□□□□ -0.2
CLN3-227ENST00000567495 CSTL1Q9H114 145 aa13.83□□□□□ -0.2
CLN3-227ENST00000567495 FLVCR2Q9UPI3 526 aa13.83□□□□□ -0.2
CLN3-227ENST00000567495 BTCP35070 178 aa13.82□□□□□ -0.2
CLN3-227ENST00000567495 ZFAND6Q6FIF0 208 aa13.82□□□□□ -0.2
CLN3-227ENST00000567495 C16orf54Q6UWD8 224 aa13.82□□□□□ -0.2
CLN3-227ENST00000567495 STXBP6Q8NFX7 210 aa13.82□□□□□ -0.2
CLN3-227ENST00000567495 CCDC32Q9BV29 185 aa13.82□□□□□ -0.2
CLN3-227ENST00000567495 PAIP2BQ9ULR5 123 aaKnown RBP13.82□□□□□ -0.2
CLN3-227ENST00000567495 MPTX1A8MV57 137 aa13.81□□□□□ -0.2
CLN3-227ENST00000567495 K7EQG2 157 aa13.81□□□□□ -0.2
CLN3-227ENST00000567495 ANXA7P20073 488 aaKnown RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms