RNA–Protein interactions for RNA: ENST00000566200.1

ABCA3-204, Transcript of ATP binding cassette subfamily A member 3, human

TSL 3

Gene ABCA3, Length 1,232 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCA3-204	ENST00000566200	RAB3D	O95716	219 aa		13.59	□□□□□ -0.23
ABCA3-204	ENST00000566200	OR5AC1	P0C628	307 aa		13.59	□□□□□ -0.23
ABCA3-204	ENST00000566200	HTR2B	P41595	481 aa		13.59	□□□□□ -0.23
ABCA3-204	ENST00000566200	FAAP20	Q6NZ36	180 aa		13.59	□□□□□ -0.23
ABCA3-204	ENST00000566200	C16orf54	Q6UWD8	224 aa		13.59	□□□□□ -0.23
ABCA3-204	ENST00000566200	OR52E5	Q8NH55	327 aa		13.59	□□□□□ -0.23
ABCA3-204	ENST00000566200	DNAH2	Q9P225	4427 aa		13.59	□□□□□ -0.23
ABCA3-204	ENST00000566200	TRAV30	A0A087WSZ9	112 aa		13.58	□□□□□ -0.24
ABCA3-204	ENST00000566200	B3GALNT1	O75752	331 aa		13.58	□□□□□ -0.24
ABCA3-204	ENST00000566200	GABARAP	O95166	117 aa		13.58	□□□□□ -0.24
ABCA3-204	ENST00000566200	ZNF182	P17025	639 aa	Predicted RBP	13.58	□□□□□ -0.24
ABCA3-204	ENST00000566200	RND2	P52198	227 aa		13.58	□□□□□ -0.24
ABCA3-204	ENST00000566200	TAS2R19	P59542	299 aa		13.58	□□□□□ -0.24
ABCA3-204	ENST00000566200	USF2	Q15853	346 aa	Predicted RBP	13.58	□□□□□ -0.24
ABCA3-204	ENST00000566200	STEAP1B	Q6NZ63	245 aa		13.58	□□□□□ -0.24
ABCA3-204	ENST00000566200	RNASE11	Q8TAA1	199 aa	Known RBP	13.58	□□□□□ -0.24
ABCA3-204	ENST00000566200	RAB40C	Q96S21	281 aa		13.58	□□□□□ -0.24
ABCA3-204	ENST00000566200	MIXL1	Q9H2W2	232 aa		13.58	□□□□□ -0.24
ABCA3-204	ENST00000566200	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	13.58	□□□□□ -0.24
ABCA3-204	ENST00000566200	CELA1	Q9UNI1	258 aa		13.58	□□□□□ -0.24
ABCA3-204	ENST00000566200	IGHV4-4	A0A075B6R2	117 aa		13.57	□□□□□ -0.24
ABCA3-204	ENST00000566200	NXPH3	O95157	252 aa		13.57	□□□□□ -0.24
ABCA3-204	ENST00000566200	DHODH	Q02127	395 aa		13.57	□□□□□ -0.24
ABCA3-204	ENST00000566200	DHRS2	Q13268	280 aa		13.57	□□□□□ -0.24
ABCA3-204	ENST00000566200	C2orf83	Q53S99	150 aa		13.57	□□□□□ -0.24
ABCA3-204	ENST00000566200	PSMG4	Q5JS54	123 aa		13.57	□□□□□ -0.24
ABCA3-204	ENST00000566200	FAM219A	Q8IW50	185 aa		13.57	□□□□□ -0.24
ABCA3-204	ENST00000566200	SELENOH	Q8IZQ5	122 aa	Known RBP	13.57	□□□□□ -0.24
ABCA3-204	ENST00000566200	OR1S2	Q8NGQ3	325 aa		13.57	□□□□□ -0.24
ABCA3-204	ENST00000566200	AP3S1	Q92572	193 aa		13.57	□□□□□ -0.24
ABCA3-204	ENST00000566200	GPR146	Q96CH1	333 aa		13.57	□□□□□ -0.24
ABCA3-204	ENST00000566200	NARS2	Q96I59	477 aa	Known RBP	13.57	□□□□□ -0.24
ABCA3-204	ENST00000566200	CACNG5	Q9UF02	275 aa		13.57	□□□□□ -0.24
ABCA3-204	ENST00000566200	DNAH17	Q9UFH2	4485 aa		13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200	TRAV10	A0A0B4J240	114 aa		13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200	RPS10-NUDT3	A0A1W2PQS6	291 aa		13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200	SCGB2A1	O75556	95 aa		13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200	HNRNPC	P07910	306 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200	YPEL3	P61236	119 aa	Predicted RBP	13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200	MEF2D	Q14814	521 aa		13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200	RNASEH2C	Q8TDP1	164 aa	Known RBP	13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200		Q8WTZ3	238 aa		13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200	RBPMS	Q93062	196 aa	Known RBP	13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200	NAA60	Q9H7X0	242 aa		13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200	HEYL	Q9NQ87	328 aa	Predicted RBP	13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200	TBC1D24	Q9ULP9	559 aa		13.56	□□□□□ -0.24
ABCA3-204	ENST00000566200	HELT	A6NFD8	242 aa		13.55	□□□□□ -0.24
ABCA3-204	ENST00000566200	FAM90A26	D6RGX4	464 aa		13.55	□□□□□ -0.24
ABCA3-204	ENST00000566200	GABARAP	H6UMI1	98 aa		13.55	□□□□□ -0.24
ABCA3-204	ENST00000566200	SMIM18	P0DKX4	95 aa		13.55	□□□□□ -0.24
ABCA3-204	ENST00000566200	SLC25A4	P12235	298 aa		13.55	□□□□□ -0.24
ABCA3-204	ENST00000566200	OR10J1	P30954	320 aa		13.55	□□□□□ -0.24
ABCA3-204	ENST00000566200	ZNF767P	Q75MW2	155 aa		13.55	□□□□□ -0.24
ABCA3-204	ENST00000566200	SLC24A4	Q8NFF2	622 aa		13.55	□□□□□ -0.24
ABCA3-204	ENST00000566200	SCRT1	Q9BWW7	348 aa		13.55	□□□□□ -0.24
ABCA3-204	ENST00000566200	IL4	P05112	153 aa		13.54	□□□□□ -0.24
ABCA3-204	ENST00000566200	C12orf74	Q32Q52	190 aa		13.54	□□□□□ -0.24
ABCA3-204	ENST00000566200	NPIPB3	Q92617	1050 aa		13.54	□□□□□ -0.24
ABCA3-204	ENST00000566200	GPR132	Q9UNW8	380 aa		13.54	□□□□□ -0.24
ABCA3-204	ENST00000566200	C14orf166	Q9Y224	244 aa	Known RBP	13.54	□□□□□ -0.24
ABCA3-204	ENST00000566200	CRYM-AS1	A6NIL9	109 aa		13.53	□□□□□ -0.24
ABCA3-204	ENST00000566200	BUB3	O43684	328 aa		13.53	□□□□□ -0.24
ABCA3-204	ENST00000566200	EIF2B2	P49770	351 aa	Known RBP	13.53	□□□□□ -0.24
ABCA3-204	ENST00000566200	AP2S1	P53680	142 aa	Predicted RBP	13.53	□□□□□ -0.24
ABCA3-204	ENST00000566200	GPR107	Q5VW38	600 aa		13.53	□□□□□ -0.24
ABCA3-204	ENST00000566200	TMEM268	Q5VZI3	342 aa		13.53	□□□□□ -0.24
ABCA3-204	ENST00000566200	C15orf40	Q8WUR7	153 aa		13.53	□□□□□ -0.24
ABCA3-204	ENST00000566200	RNF126	Q9BV68	326 aa		13.53	□□□□□ -0.24
ABCA3-204	ENST00000566200	CEBPZOS	A8MTT3	80 aa		13.52	□□□□□ -0.25
ABCA3-204	ENST00000566200		H3BMM0	161 aa		13.52	□□□□□ -0.25
ABCA3-204	ENST00000566200	CTDSP2	O14595	271 aa		13.52	□□□□□ -0.25
ABCA3-204	ENST00000566200	TOMM40	O96008	361 aa		13.52	□□□□□ -0.25
ABCA3-204	ENST00000566200	SURF2	Q15527	256 aa	Predicted RBP	13.52	□□□□□ -0.25
ABCA3-204	ENST00000566200	NMS	Q5H8A3	153 aa		13.52	□□□□□ -0.25
ABCA3-204	ENST00000566200	NRN1	Q9NPD7	142 aa		13.52	□□□□□ -0.25
ABCA3-204	ENST00000566200	PRR13	Q9NZ81	148 aa		13.52	□□□□□ -0.25
ABCA3-204	ENST00000566200	XCL2	Q9UBD3	114 aa		13.52	□□□□□ -0.25
ABCA3-204	ENST00000566200	TMEM56-RWDD3	S4R434	201 aa		13.52	□□□□□ -0.25
ABCA3-204	ENST00000566200	PKHD1	P08F94	4074 aa		13.51	□□□□□ -0.25
ABCA3-204	ENST00000566200	AMBP	P02760	352 aa		13.51	□□□□□ -0.25
ABCA3-204	ENST00000566200	PSG1	P11464	419 aa		13.51	□□□□□ -0.25
ABCA3-204	ENST00000566200	NPY1R	P25929	384 aa		13.51	□□□□□ -0.25
ABCA3-204	ENST00000566200	SSBP1	Q04837	148 aa	Known RBP	13.51	□□□□□ -0.25
ABCA3-204	ENST00000566200	SIGLEC15	Q6ZMC9	328 aa		13.51	□□□□□ -0.25
ABCA3-204	ENST00000566200	OR4C16	Q8NGL9	310 aa		13.51	□□□□□ -0.25
ABCA3-204	ENST00000566200	SMIM4	Q8WVI0	70 aa		13.51	□□□□□ -0.25
ABCA3-204	ENST00000566200	ACY3	Q96HD9	319 aa		13.51	□□□□□ -0.25
ABCA3-204	ENST00000566200	SEPSECS	Q9HD40	501 aa	Known RBP	13.51	□□□□□ -0.25
ABCA3-204	ENST00000566200	DEFB131B	A0A096LNP1	70 aa		13.5	□□□□□ -0.25
ABCA3-204	ENST00000566200		A0A1B0GVY2	172 aa		13.5	□□□□□ -0.25
ABCA3-204	ENST00000566200	RD3L	P0DJH9	198 aa		13.5	□□□□□ -0.25
ABCA3-204	ENST00000566200	DEFB1	P60022	68 aa		13.5	□□□□□ -0.25
ABCA3-204	ENST00000566200	MRPS10	P82664	201 aa	Known RBP	13.5	□□□□□ -0.25
ABCA3-204	ENST00000566200	GDF5OS	Q5U4N7	250 aa		13.5	□□□□□ -0.25
ABCA3-204	ENST00000566200	OR51G1	Q8NGK1	321 aa		13.5	□□□□□ -0.25
ABCA3-204	ENST00000566200	DISC1	C4P0D8	188 aa		13.49	□□□□□ -0.25
ABCA3-204	ENST00000566200	RGS5	O15539	181 aa		13.49	□□□□□ -0.25
ABCA3-204	ENST00000566200	HLA-DRB4	P13762	266 aa		13.49	□□□□□ -0.25
ABCA3-204	ENST00000566200	SNRPD3	P62318	126 aa	Known RBP	13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 213.3 ms