RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 HYLS1Q96M11 299 aa15.91■□□□□ 0.14
CLN3-212ENST00000564574 MFFQ9GZY8 342 aa15.91■□□□□ 0.14
CLN3-212ENST00000564574 LINC01619G3V211 115 aa15.9■□□□□ 0.14
CLN3-212ENST00000564574 NUPL2O15504 423 aaKnown RBP15.9■□□□□ 0.14
CLN3-212ENST00000564574 GGCTO75223 188 aaKnown RBP15.9■□□□□ 0.14
CLN3-212ENST00000564574 DFFBO76075 338 aa15.9■□□□□ 0.14
CLN3-212ENST00000564574 CD300CQ08708 224 aa15.9■□□□□ 0.14
CLN3-212ENST00000564574 OR2F1Q13607 317 aa15.9■□□□□ 0.14
CLN3-212ENST00000564574 ZNF345Q14585 488 aa15.9■□□□□ 0.14
CLN3-212ENST00000564574 OR11H1Q8NG94 326 aa15.9■□□□□ 0.14
CLN3-212ENST00000564574 OR1N2Q8NGR9 330 aa15.9■□□□□ 0.14
CLN3-212ENST00000564574 DPF1Q92782 380 aa15.9■□□□□ 0.14
CLN3-212ENST00000564574 IGHV4OR15-8A0A075B7B6 117 aa15.89■□□□□ 0.13
CLN3-212ENST00000564574 A0A087WW49 117 aa15.89■□□□□ 0.13
CLN3-212ENST00000564574 TRBV12-3P01733 135 aa15.89■□□□□ 0.13
CLN3-212ENST00000564574 CTSGP08311 255 aa15.89■□□□□ 0.13
CLN3-212ENST00000564574 ZP3P21754 424 aa15.89■□□□□ 0.13
CLN3-212ENST00000564574 OR10J1P30954 320 aa15.89■□□□□ 0.13
CLN3-212ENST00000564574 ZNF616Q08AN1 781 aa15.89■□□□□ 0.13
CLN3-212ENST00000564574 ZFP69Q49AA0 526 aa15.89■□□□□ 0.13
CLN3-212ENST00000564574 OR4F17Q8NGA8 305 aa15.89■□□□□ 0.13
CLN3-212ENST00000564574 OR4F4Q96R69 305 aa15.89■□□□□ 0.13
CLN3-212ENST00000564574 ATP5SQ99766 215 aa15.89■□□□□ 0.13
CLN3-212ENST00000564574 PPP5D1E7EU14 171 aa15.88■□□□□ 0.13
CLN3-212ENST00000564574 BMPR1BO00238 502 aa15.88■□□□□ 0.13
CLN3-212ENST00000564574 IGLC1P0CG04 106 aa15.88■□□□□ 0.13
CLN3-212ENST00000564574 MYCNOSP40205 109 aa15.88■□□□□ 0.13
CLN3-212ENST00000564574 RELQ04864 619 aaPredicted RBP15.88■□□□□ 0.13
CLN3-212ENST00000564574 FHL3Q13643 280 aa15.88■□□□□ 0.13
CLN3-212ENST00000564574 CLINT1Q14677 625 aa15.88■□□□□ 0.13
CLN3-212ENST00000564574 DEFB136Q30KP8 78 aa15.88■□□□□ 0.13
CLN3-212ENST00000564574 TEPPQ6URK8 271 aa15.88■□□□□ 0.13
CLN3-212ENST00000564574 TREML4Q6UXN2 200 aa15.88■□□□□ 0.13
CLN3-212ENST00000564574 RAX2Q96IS3 184 aa15.88■□□□□ 0.13
CLN3-212ENST00000564574 TRGV9Q99603 122 aa15.88■□□□□ 0.13
CLN3-212ENST00000564574 FBXL17Q9UF56 701 aa15.88■□□□□ 0.13
CLN3-212ENST00000564574 A0A0D9SG52 128 aa15.87■□□□□ 0.13
CLN3-212ENST00000564574 ZFP92A6NM28 416 aa15.87■□□□□ 0.13
CLN3-212ENST00000564574 CCL24O00175 119 aa15.87■□□□□ 0.13
CLN3-212ENST00000564574 FABP1P07148 127 aa15.87■□□□□ 0.13
CLN3-212ENST00000564574 ADMP35318 185 aa15.87■□□□□ 0.13
CLN3-212ENST00000564574 AP2S1P53680 142 aaPredicted RBP15.87■□□□□ 0.13
CLN3-212ENST00000564574 YPEL3P61236 119 aaPredicted RBP15.87■□□□□ 0.13
CLN3-212ENST00000564574 RPEL1Q2QD12 228 aa15.87■□□□□ 0.13
CLN3-212ENST00000564574 KCNRGQ8N5I3 272 aa15.87■□□□□ 0.13
CLN3-212ENST00000564574 CHRDL1Q9BU40 450 aa15.87■□□□□ 0.13
CLN3-212ENST00000564574 WDR83OSQ9Y284 106 aa15.87■□□□□ 0.13
CLN3-212ENST00000564574 IGKV1D-37A0A075B6S9 117 aa15.86■□□□□ 0.13
CLN3-212ENST00000564574 UBE2L5PA0A1B0GUS4 154 aa15.86■□□□□ 0.13
CLN3-212ENST00000564574 TAAR5O14804 337 aa15.86■□□□□ 0.13
CLN3-212ENST00000564574 TIGITQ495A1 244 aa15.86■□□□□ 0.13
CLN3-212ENST00000564574 ZNF600Q6ZNG1 722 aa15.86■□□□□ 0.13
CLN3-212ENST00000564574 SMIM3Q9BZL3 60 aa15.86■□□□□ 0.13
CLN3-212ENST00000564574 LSM4Q9Y4Z0 139 aaKnown RBP15.86■□□□□ 0.13
CLN3-212ENST00000564574 IGKV1OR2-108A0A075B7D4 117 aa15.85■□□□□ 0.13
CLN3-212ENST00000564574 M0QZ24 198 aa15.85■□□□□ 0.13
CLN3-212ENST00000564574 MPDU1O75352 247 aa15.85■□□□□ 0.13
CLN3-212ENST00000564574 IFNA5P01569 189 aa15.85■□□□□ 0.13
CLN3-212ENST00000564574 IGKV1-17P01599 117 aa15.85■□□□□ 0.13
CLN3-212ENST00000564574 HOXD3P31249 432 aaPredicted RBP15.85■□□□□ 0.13
CLN3-212ENST00000564574 EIF2B2P49770 351 aaKnown RBP15.85■□□□□ 0.13
CLN3-212ENST00000564574 RAB31Q13636 194 aa15.85■□□□□ 0.13
CLN3-212ENST00000564574 ZNF266Q14584 549 aa15.85■□□□□ 0.13
CLN3-212ENST00000564574 GPHB5Q86YW7 130 aa15.85■□□□□ 0.13
CLN3-212ENST00000564574 PARD6GQ9BYG4 376 aaPredicted RBP15.85■□□□□ 0.13
CLN3-212ENST00000564574 NDUFA4O00483 81 aa15.84■□□□□ 0.13
CLN3-212ENST00000564574 TOMM40O96008 361 aa15.84■□□□□ 0.13
CLN3-212ENST00000564574 CXCL2P19875 107 aa15.84■□□□□ 0.13
CLN3-212ENST00000564574 OR2C1O95371 312 aa15.83■□□□□ 0.12
CLN3-212ENST00000564574 PF4P02776 101 aa15.83■□□□□ 0.12
CLN3-212ENST00000564574 FGF7P21781 194 aa15.83■□□□□ 0.12
CLN3-212ENST00000564574 SELENOTP62341 195 aa15.83■□□□□ 0.12
CLN3-212ENST00000564574 FAM106AQ4KMX7 169 aa15.83■□□□□ 0.12
CLN3-212ENST00000564574 BTNL8Q6UX41 500 aa15.83■□□□□ 0.12
CLN3-212ENST00000564574 C1QL4Q86Z23 238 aa15.83■□□□□ 0.12
CLN3-212ENST00000564574 Q8WTZ3 238 aa15.83■□□□□ 0.12
CLN3-212ENST00000564574 DUX3Q96PT4 197 aa15.83■□□□□ 0.12
CLN3-212ENST00000564574 WDR61Q9GZS3 305 aaKnown RBP15.83■□□□□ 0.12
CLN3-212ENST00000564574 WFDC1Q9HC57 220 aa15.83■□□□□ 0.12
CLN3-212ENST00000564574 CFDP00746 253 aaPredicted RBP15.82■□□□□ 0.12
CLN3-212ENST00000564574 CYP2G1PQ6ZSU1 146 aa15.82■□□□□ 0.12
CLN3-212ENST00000564574 REC114Q7Z4M0 266 aa15.82■□□□□ 0.12
CLN3-212ENST00000564574 SCGB1C1Q8TD33 95 aa15.82■□□□□ 0.12
CLN3-212ENST00000564574 MGST2Q99735 147 aa15.82■□□□□ 0.12
CLN3-212ENST00000564574 ARPC5LQ9BPX5 153 aa15.82■□□□□ 0.12
CLN3-212ENST00000564574 BORCS7-ASMTA0A0B4J1R7 106 aa15.81■□□□□ 0.12
CLN3-212ENST00000564574 KANTRA0A1W2PQU2 76 aa15.81■□□□□ 0.12
CLN3-212ENST00000564574 LGALS9O00182 355 aa15.81■□□□□ 0.12
CLN3-212ENST00000564574 RD3LP0DJH9 198 aa15.81■□□□□ 0.12
CLN3-212ENST00000564574 CAMLGP49069 296 aa15.81■□□□□ 0.12
CLN3-212ENST00000564574 SLURP1P55000 103 aa15.81■□□□□ 0.12
CLN3-212ENST00000564574 KLF5Q13887 457 aaPredicted RBP15.81■□□□□ 0.12
CLN3-212ENST00000564574 LGALSLQ3ZCW2 172 aaPredicted RBP15.81■□□□□ 0.12
CLN3-212ENST00000564574 TMUB2Q71RG4 321 aa15.81■□□□□ 0.12
CLN3-212ENST00000564574 BPIFCQ8NFQ6 507 aa15.81■□□□□ 0.12
CLN3-212ENST00000564574 ARL6Q9H0F7 186 aa15.81■□□□□ 0.12
CLN3-212ENST00000564574 TENM1Q9UKZ4 2725 aa15.81■□□□□ 0.12
CLN3-212ENST00000564574 C17orf112F2Z3M2 114 aa15.8■□□□□ 0.12
CLN3-212ENST00000564574 AGPAT2O15120 278 aa15.8■□□□□ 0.12
CLN3-212ENST00000564574 BCL2L11O43521 198 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms