RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 IGKV1-17P01599 117 aa11.62□□□□□ -0.55
VPS39-203ENST00000561797 RPL35AP18077 110 aaKnown RBP11.62□□□□□ -0.55
VPS39-203ENST00000561797 RBMS2Q15434 407 aaKnown RBP11.62□□□□□ -0.55
VPS39-203ENST00000561797 ZNF124Q15973 351 aa11.62□□□□□ -0.55
VPS39-203ENST00000561797 ETFRF1Q6IPR1 90 aa11.62□□□□□ -0.55
VPS39-203ENST00000561797 OR1S2Q8NGQ3 325 aa11.62□□□□□ -0.55
VPS39-203ENST00000561797 NPIPB3Q92617 1050 aa11.62□□□□□ -0.55
VPS39-203ENST00000561797 ACY3Q96HD9 319 aa11.62□□□□□ -0.55
VPS39-203ENST00000561797 U3KQ87 197 aa11.62□□□□□ -0.55
VPS39-203ENST00000561797 PIGBOS1A0A0B4J2F0 54 aa11.61□□□□□ -0.55
VPS39-203ENST00000561797 DNASE2O00115 360 aaPredicted RBP11.61□□□□□ -0.55
VPS39-203ENST00000561797 IGLC1P0CG04 106 aa11.61□□□□□ -0.55
VPS39-203ENST00000561797 OR10J1P30954 320 aa11.61□□□□□ -0.55
VPS39-203ENST00000561797 PAFAH1B2P68402 229 aa11.61□□□□□ -0.55
VPS39-203ENST00000561797 LRTM2Q8N967 370 aa11.61□□□□□ -0.55
VPS39-203ENST00000561797 METTL26Q96S19 204 aa11.61□□□□□ -0.55
VPS39-203ENST00000561797 SDHCQ99643 169 aaPredicted RBP11.61□□□□□ -0.55
VPS39-203ENST00000561797 OVOL2Q9BRP0 275 aa11.61□□□□□ -0.55
VPS39-203ENST00000561797 TMEM231Q9H6L2 316 aa11.61□□□□□ -0.55
VPS39-203ENST00000561797 A0A1W2PS18 150 aa11.6□□□□□ -0.55
VPS39-203ENST00000561797 NAP1L6A6NFF2 107 aa11.6□□□□□ -0.55
VPS39-203ENST00000561797 PITX3O75364 302 aa11.6□□□□□ -0.55
VPS39-203ENST00000561797 IFNA4P05014 189 aa11.6□□□□□ -0.55
VPS39-203ENST00000561797 CD5P06127 495 aa11.6□□□□□ -0.55
VPS39-203ENST00000561797 HOXB5P09067 269 aa11.6□□□□□ -0.55
VPS39-203ENST00000561797 IAPPP10997 89 aa11.6□□□□□ -0.55
VPS39-203ENST00000561797 APOC4P55056 127 aa11.6□□□□□ -0.55
VPS39-203ENST00000561797 CMC4P56277 68 aaPredicted RBP11.6□□□□□ -0.55
VPS39-203ENST00000561797 Q8WTZ3 238 aa11.6□□□□□ -0.55
VPS39-203ENST00000561797 MS4A6AQ9H2W1 248 aa11.6□□□□□ -0.55
VPS39-203ENST00000561797 MAP6D1Q9H9H5 199 aa11.6□□□□□ -0.55
VPS39-203ENST00000561797 NDUFA13Q9P0J0 144 aa11.6□□□□□ -0.55
VPS39-203ENST00000561797 FLVCR2Q9UPI3 526 aa11.6□□□□□ -0.55
VPS39-203ENST00000561797 NDUFB6O95139 128 aa11.59□□□□□ -0.55
VPS39-203ENST00000561797 CRYBB3P26998 211 aa11.59□□□□□ -0.55
VPS39-203ENST00000561797 YPEL3P61236 119 aaPredicted RBP11.59□□□□□ -0.55
VPS39-203ENST00000561797 NARS2Q96I59 477 aaKnown RBP11.59□□□□□ -0.55
VPS39-203ENST00000561797 RABAC1Q9UI14 185 aa11.59□□□□□ -0.55
VPS39-203ENST00000561797 PAIP2BQ9ULR5 123 aaKnown RBP11.59□□□□□ -0.55
VPS39-203ENST00000561797 TMED3Q9Y3Q3 217 aa11.59□□□□□ -0.55
VPS39-203ENST00000561797 AGRNO00468 2067 aa11.59□□□□□ -0.55
VPS39-203ENST00000561797 SLC25A6P12236 298 aa11.58□□□□□ -0.56
VPS39-203ENST00000561797 P2RY1P47900 373 aa11.58□□□□□ -0.56
VPS39-203ENST00000561797 DEFB135Q30KP9 77 aa11.58□□□□□ -0.56
VPS39-203ENST00000561797 GGNBP1Q5YKI7 109 aa11.58□□□□□ -0.56
VPS39-203ENST00000561797 STPG3Q8N7X2 389 aa11.58□□□□□ -0.56
VPS39-203ENST00000561797 STXBP6Q8NFX7 210 aa11.58□□□□□ -0.56
VPS39-203ENST00000561797 MAGT1Q9H0U3 335 aa11.58□□□□□ -0.56
VPS39-203ENST00000561797 C9orf170A2RU37 121 aa11.57□□□□□ -0.56
VPS39-203ENST00000561797 CENPXA8MT69 81 aa11.57□□□□□ -0.56
VPS39-203ENST00000561797 UBE2CO00762 179 aa11.57□□□□□ -0.56
VPS39-203ENST00000561797 SPRY2O43597 315 aa11.57□□□□□ -0.56
VPS39-203ENST00000561797 MED6O75586 246 aa11.57□□□□□ -0.56
VPS39-203ENST00000561797 IL4P05112 153 aa11.57□□□□□ -0.56
VPS39-203ENST00000561797 HNRNPCP07910 306 aaKnown RBP eCLIP11.57□□□□□ -0.56
VPS39-203ENST00000561797 IL7P13232 177 aa11.57□□□□□ -0.56
VPS39-203ENST00000561797 DEFB131AP59861 70 aa11.57□□□□□ -0.56
VPS39-203ENST00000561797 UBE2MP61081 183 aaKnown RBP11.57□□□□□ -0.56
VPS39-203ENST00000561797 FAM24BQ8N5W8 94 aa11.57□□□□□ -0.56
VPS39-203ENST00000561797 GRAMD2BQ96HH9 432 aa11.57□□□□□ -0.56
VPS39-203ENST00000561797 KIR2DL5BA0A0G2JN68 375 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 KIR2DL5BA0A0G2JPC4 375 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 FAM90A26D6RGX4 464 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 WRBO00258 174 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 ADAP1O75689 374 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 TOMM40O96008 361 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 RD3LP0DJH9 198 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 BTCP35070 178 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 ATP5IP56385 69 aaPredicted RBP11.56□□□□□ -0.56
VPS39-203ENST00000561797 GAMTQ14353 236 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 USF2Q15853 346 aaPredicted RBP11.56□□□□□ -0.56
VPS39-203ENST00000561797 LEMD1Q68G75 181 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 Q6ZWC4 215 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 KIR2DL5AQ8N109 375 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 KIR2DL5BQ8NHK3 375 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 SLC35E1Q96K37 410 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 U3KQE9 123 aa11.56□□□□□ -0.56
VPS39-203ENST00000561797 TRAV2A0A0B4J234 112 aa11.55□□□□□ -0.56
VPS39-203ENST00000561797 ZFP92A6NM28 416 aa11.55□□□□□ -0.56
VPS39-203ENST00000561797 SYNGR2O43760 224 aa11.55□□□□□ -0.56
VPS39-203ENST00000561797 OR4E1P0C645 316 aa11.55□□□□□ -0.56
VPS39-203ENST00000561797 PSG1P11464 419 aa11.55□□□□□ -0.56
VPS39-203ENST00000561797 ANXA7P20073 488 aaKnown RBP11.55□□□□□ -0.56
VPS39-203ENST00000561797 GPX4P36969 197 aaPredicted RBP11.55□□□□□ -0.56
VPS39-203ENST00000561797 RAB11AP62491 216 aa11.55□□□□□ -0.56
VPS39-203ENST00000561797 OR51G1Q8NGK1 321 aa11.55□□□□□ -0.56
VPS39-203ENST00000561797 IL17DQ8TAD2 202 aa11.55□□□□□ -0.56
VPS39-203ENST00000561797 C7orf50Q9BRJ6 194 aaKnown RBP11.55□□□□□ -0.56
VPS39-203ENST00000561797 K7EQG2 157 aa11.54□□□□□ -0.56
VPS39-203ENST00000561797 DHRS2Q13268 280 aa11.54□□□□□ -0.56
VPS39-203ENST00000561797 C4orf46Q504U0 113 aa11.54□□□□□ -0.56
VPS39-203ENST00000561797 C16orf54Q6UWD8 224 aa11.54□□□□□ -0.56
VPS39-203ENST00000561797 LYG2Q86SG7 212 aa11.54□□□□□ -0.56
VPS39-203ENST00000561797 COQ8AQ8NI60 647 aa11.54□□□□□ -0.56
VPS39-203ENST00000561797 RNF183Q96D59 192 aa11.54□□□□□ -0.56
VPS39-203ENST00000561797 CIB3Q96Q77 187 aaPredicted RBP11.54□□□□□ -0.56
VPS39-203ENST00000561797 CSTL1Q9H114 145 aa11.54□□□□□ -0.56
VPS39-203ENST00000561797 TP53TG1Q9Y2A0 90 aa11.54□□□□□ -0.56
VPS39-203ENST00000561797 A0A0J9YWU9 116 aa11.53□□□□□ -0.56
VPS39-203ENST00000561797 MPTX1A8MV57 137 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms