RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 V9GYH0 126 aa12.98□□□□□ -0.33
HDDC3-205ENST00000559898 KNCNA6PVL3 124 aa12.97□□□□□ -0.33
HDDC3-205ENST00000559898 K7EQG2 157 aa12.97□□□□□ -0.33
HDDC3-205ENST00000559898 JTBO76095 146 aa12.97□□□□□ -0.33
HDDC3-205ENST00000559898 GIG44P09565 113 aaPredicted RBP12.97□□□□□ -0.33
HDDC3-205ENST00000559898 USF2Q15853 346 aaPredicted RBP12.97□□□□□ -0.33
HDDC3-205ENST00000559898 STXBP6Q8NFX7 210 aa12.97□□□□□ -0.33
HDDC3-205ENST00000559898 NPIPB3Q92617 1050 aa12.97□□□□□ -0.33
HDDC3-205ENST00000559898 RSL24D1Q9UHA3 163 aaKnown RBP12.97□□□□□ -0.33
HDDC3-205ENST00000559898 KMT2AQ03164 3969 aa12.97□□□□□ -0.33
HDDC3-205ENST00000559898 MPTX1A8MV57 137 aa12.96□□□□□ -0.33
HDDC3-205ENST00000559898 SULT1A3P0DMM9 295 aa12.96□□□□□ -0.33
HDDC3-205ENST00000559898 SULT1A4P0DMN0 295 aa12.96□□□□□ -0.33
HDDC3-205ENST00000559898 NPY1RP25929 384 aa12.96□□□□□ -0.33
HDDC3-205ENST00000559898 OR10J1P30954 320 aa12.96□□□□□ -0.33
HDDC3-205ENST00000559898 DCANP1Q8TF63 244 aa12.96□□□□□ -0.33
HDDC3-205ENST00000559898 ACY3Q96HD9 319 aa12.96□□□□□ -0.33
HDDC3-205ENST00000559898 METTL26Q96S19 204 aa12.96□□□□□ -0.33
HDDC3-205ENST00000559898 SCP2D1Q9UJQ7 156 aa12.96□□□□□ -0.33
HDDC3-205ENST00000559898 CA1P00915 261 aaPredicted RBP12.95□□□□□ -0.34
HDDC3-205ENST00000559898 ZNF688P0C7X2 276 aa12.95□□□□□ -0.34
HDDC3-205ENST00000559898 PAFAH1B2P68402 229 aa12.95□□□□□ -0.34
HDDC3-205ENST00000559898 PYDC2Q56P42 97 aa12.95□□□□□ -0.34
HDDC3-205ENST00000559898 LINC00476Q8WZB0 136 aa12.95□□□□□ -0.34
HDDC3-205ENST00000559898 IL22RA2Q969J5 263 aa12.95□□□□□ -0.34
HDDC3-205ENST00000559898 HSPB7Q9UBY9 170 aa12.95□□□□□ -0.34
HDDC3-205ENST00000559898 C4BPBP20851 252 aa12.94□□□□□ -0.34
HDDC3-205ENST00000559898 NANOS2P60321 138 aaKnown RBP12.94□□□□□ -0.34
HDDC3-205ENST00000559898 SMCO1Q147U7 214 aa12.94□□□□□ -0.34
HDDC3-205ENST00000559898 CEMP1Q6PRD7 247 aaPredicted RBP12.94□□□□□ -0.34
HDDC3-205ENST00000559898 TMED4Q7Z7H5 227 aa12.94□□□□□ -0.34
HDDC3-205ENST00000559898 OR1S2Q8NGQ3 325 aa12.94□□□□□ -0.34
HDDC3-205ENST00000559898 OR11H2Q8NH07 326 aa12.94□□□□□ -0.34
HDDC3-205ENST00000559898 RNASEH2CQ8TDP1 164 aaKnown RBP12.94□□□□□ -0.34
HDDC3-205ENST00000559898 GLMPQ8WWB7 406 aa12.94□□□□□ -0.34
HDDC3-205ENST00000559898 RARRES2Q99969 163 aa12.94□□□□□ -0.34
HDDC3-205ENST00000559898 RBM38Q9H0Z9 239 aaKnown RBP12.94□□□□□ -0.34
HDDC3-205ENST00000559898 RABL2AQ9UBK7 228 aaPredicted RBP12.94□□□□□ -0.34
HDDC3-205ENST00000559898 RABL2BQ9UNT1 228 aa12.94□□□□□ -0.34
HDDC3-205ENST00000559898 A0A0B4J2A0 478 aa12.93□□□□□ -0.34
HDDC3-205ENST00000559898 RPS10-NUDT3A0A1W2PQS6 291 aa12.93□□□□□ -0.34
HDDC3-205ENST00000559898 NOL3O60936 208 aaKnown RBP12.93□□□□□ -0.34
HDDC3-205ENST00000559898 IFNA10P01566 189 aa12.93□□□□□ -0.34
HDDC3-205ENST00000559898 C16orf54Q6UWD8 224 aa12.93□□□□□ -0.34
HDDC3-205ENST00000559898 DTD1Q8TEA8 209 aa12.93□□□□□ -0.34
HDDC3-205ENST00000559898 SHPKQ9UHJ6 478 aa12.93□□□□□ -0.34
HDDC3-205ENST00000559898 KCNIP3Q9Y2W7 256 aa12.93□□□□□ -0.34
HDDC3-205ENST00000559898 IGKV1D-37A0A075B6S9 117 aa12.92□□□□□ -0.34
HDDC3-205ENST00000559898 TRAV30A0A087WSZ9 112 aa12.92□□□□□ -0.34
HDDC3-205ENST00000559898 TRAV2A0A0B4J234 112 aa12.92□□□□□ -0.34
HDDC3-205ENST00000559898 LY6G6CO95867 125 aa12.92□□□□□ -0.34
HDDC3-205ENST00000559898 IL4P05112 153 aa12.92□□□□□ -0.34
HDDC3-205ENST00000559898 HNRNPCP07910 306 aaKnown RBP eCLIP12.92□□□□□ -0.34
HDDC3-205ENST00000559898 SLC25A4P12235 298 aa12.92□□□□□ -0.34
HDDC3-205ENST00000559898 CCR6P51684 374 aa12.92□□□□□ -0.34
HDDC3-205ENST00000559898 CMC4P56277 68 aaPredicted RBP12.92□□□□□ -0.34
HDDC3-205ENST00000559898 DEFB1P60022 68 aa12.92□□□□□ -0.34
HDDC3-205ENST00000559898 YPEL3P61236 119 aaPredicted RBP12.92□□□□□ -0.34
HDDC3-205ENST00000559898 TRPT1Q86TN4 253 aaKnown RBP12.92□□□□□ -0.34
HDDC3-205ENST00000559898 A0A1W2PS18 150 aa12.91□□□□□ -0.34
HDDC3-205ENST00000559898 CCDC160A6NGH7 325 aa12.91□□□□□ -0.34
HDDC3-205ENST00000559898 PITX3O75364 302 aa12.91□□□□□ -0.34
HDDC3-205ENST00000559898 IAPPP10997 89 aa12.91□□□□□ -0.34
HDDC3-205ENST00000559898 PSG1P11464 419 aa12.91□□□□□ -0.34
HDDC3-205ENST00000559898 ZNF90Q03938 601 aa12.91□□□□□ -0.34
HDDC3-205ENST00000559898 CCDC190Q86UF4 302 aa12.91□□□□□ -0.34
HDDC3-205ENST00000559898 LGI3Q8N145 548 aa12.91□□□□□ -0.34
HDDC3-205ENST00000559898 TOMM5Q8N4H5 51 aa12.91□□□□□ -0.34
HDDC3-205ENST00000559898 OR51G1Q8NGK1 321 aa12.91□□□□□ -0.34
HDDC3-205ENST00000559898 Q8WTZ3 238 aa12.91□□□□□ -0.34
HDDC3-205ENST00000559898 PHLDA1Q8WV24 401 aaPredicted RBP12.91□□□□□ -0.34
HDDC3-205ENST00000559898 TMEM231Q9H6L2 316 aa12.91□□□□□ -0.34
HDDC3-205ENST00000559898 CLEC5AQ9NY25 188 aa12.91□□□□□ -0.34
HDDC3-205ENST00000559898 VPS13DQ5THJ4 4388 aa12.9□□□□□ -0.34
HDDC3-205ENST00000559898 NUPR2A6NF83 97 aa12.9□□□□□ -0.34
HDDC3-205ENST00000559898 TOMM40O96008 361 aa12.9□□□□□ -0.34
HDDC3-205ENST00000559898 CD5P06127 495 aa12.9□□□□□ -0.34
HDDC3-205ENST00000559898 DHRS2Q13268 280 aa12.9□□□□□ -0.34
HDDC3-205ENST00000559898 STHQ8IWL8 128 aa12.9□□□□□ -0.34
HDDC3-205ENST00000559898 OR1S1Q8NH92 325 aa12.9□□□□□ -0.34
HDDC3-205ENST00000559898 GATAD1Q8WUU5 269 aa12.9□□□□□ -0.34
HDDC3-205ENST00000559898 FRAS1Q86XX4 4008 aa12.9□□□□□ -0.34
HDDC3-205ENST00000559898 RBMY1A1P0DJD3 496 aaKnown RBP12.89□□□□□ -0.35
HDDC3-205ENST00000559898 RBMY1CP0DJD4 496 aa12.89□□□□□ -0.35
HDDC3-205ENST00000559898 PPP1R1AQ13522 171 aa12.89□□□□□ -0.35
HDDC3-205ENST00000559898 GAMTQ14353 236 aa12.89□□□□□ -0.35
HDDC3-205ENST00000559898 RBMY1FQ15415 496 aaKnown RBP12.89□□□□□ -0.35
HDDC3-205ENST00000559898 PSMG4Q5JS54 123 aa12.89□□□□□ -0.35
HDDC3-205ENST00000559898 ACTL10Q5JWF8 245 aa12.89□□□□□ -0.35
HDDC3-205ENST00000559898 SCGB3A2Q96PL1 93 aa12.89□□□□□ -0.35
HDDC3-205ENST00000559898 MAGT1Q9H0U3 335 aa12.89□□□□□ -0.35
HDDC3-205ENST00000559898 FBXL17Q9UF56 701 aa12.89□□□□□ -0.35
HDDC3-205ENST00000559898 BUB3O43684 328 aa12.88□□□□□ -0.35
HDDC3-205ENST00000559898 RD3LP0DJH9 198 aa12.88□□□□□ -0.35
HDDC3-205ENST00000559898 ATF4P18848 351 aaPredicted RBP12.88□□□□□ -0.35
HDDC3-205ENST00000559898 VAMP1P23763 118 aa12.88□□□□□ -0.35
HDDC3-205ENST00000559898 Q8NAQ8 132 aa12.88□□□□□ -0.35
HDDC3-205ENST00000559898 GRAMD2BQ96HH9 432 aa12.88□□□□□ -0.35
HDDC3-205ENST00000559898 RAB40CQ96S21 281 aa12.88□□□□□ -0.35
HDDC3-205ENST00000559898 U3KQ87 197 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms