RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 MALRD1Q5VYJ5 2156 aa9.25□□□□□ -0.93
LDLR-208ENST00000558518 hADV38S2A0JD32 116 aa9.25□□□□□ -0.93
LDLR-208ENST00000558518 TNFSF15O95150 251 aa9.25□□□□□ -0.93
LDLR-208ENST00000558518 CCL8P80075 99 aa9.25□□□□□ -0.93
LDLR-208ENST00000558518 SLC25A34Q6PIV7 304 aa9.25□□□□□ -0.93
LDLR-208ENST00000558518 PEX7O00628 323 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 NTN3O00634 580 aaPredicted RBP9.24□□□□□ -0.93
LDLR-208ENST00000558518 MGST3O14880 152 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 SAA1P0DJI8 122 aaPredicted RBP9.24□□□□□ -0.93
LDLR-208ENST00000558518 EIF4EBP1Q13541 118 aaPredicted RBP9.24□□□□□ -0.93
LDLR-208ENST00000558518 TRIP6Q15654 476 aaKnown RBP9.24□□□□□ -0.93
LDLR-208ENST00000558518 SAPCD1Q5SSQ6 148 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 LINC00305Q7Z4B0 112 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 PDPNQ86YL7 162 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 WFDC8Q8IUA0 241 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 TEX45Q8NA69 505 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 CHRDL1Q9BU40 450 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 ARRDC1-AS1Q9H2J1 176 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 P01737 135 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 ERHP84090 104 aaKnown RBP9.24□□□□□ -0.93
LDLR-208ENST00000558518 SRSF6Q13247 344 aaKnown RBP9.24□□□□□ -0.93
LDLR-208ENST00000558518 RTL8BQ17RB0 113 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 PRNTQ86SH4 94 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 SLC25A33Q9BSK2 321 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 SSUH2Q9Y2M2 353 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 S4R3C0 116 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 GCSAMQ8N6F7 178 aa9.24□□□□□ -0.93
LDLR-208ENST00000558518 F11RQ9Y624 299 aaKnown RBP9.24□□□□□ -0.93
LDLR-208ENST00000558518 KLK10O43240 276 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 IGLV2-8P01709 118 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 CYC1P08574 325 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 CCL3L1P16619 93 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 COL8A1P27658 744 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 GAL3ST2Q9H3Q3 398 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 HES4Q9HCC6 221 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 JPT1Q9UK76 154 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 CSMD1Q96PZ7 3565 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 TEX50A0A1B0GTY4 177 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 E7EUB6 86 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 PRR20EP86478 221 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 PRR20CP86479 221 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 PRR20DP86480 221 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 PRR20BP86481 221 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 PRR20AP86496 221 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 TRAV9-1A0A075B6T8 112 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 IGHV2-26A0A0B4J1V2 119 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 A0A1W2PRE2 83 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 SAP30O75446 220 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 CRYABP02511 175 aaKnown RBP9.23□□□□□ -0.93
LDLR-208ENST00000558518 ESDP10768 282 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 CST9LQ9H4G1 147 aa9.23□□□□□ -0.93
LDLR-208ENST00000558518 PRSS46E5RG02 174 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 HIST1H1EP10412 219 aaKnown RBP9.22□□□□□ -0.93
LDLR-208ENST00000558518 Q71RC1 249 aaPredicted RBP9.22□□□□□ -0.93
LDLR-208ENST00000558518 CIARTQ8N365 385 aaPredicted RBP9.22□□□□□ -0.93
LDLR-208ENST00000558518 OR10X1Q8NGY0 326 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 C11orf52Q96A22 123 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 IGHV1-69-2A0A0G2JMI3 117 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 IGLC7A0M8Q6 106 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 SLC25A17O43808 307 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 NHLH1Q02575 133 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 DIAPH2-AS1Q14236 149 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 PRSS3P2Q8NHM4 247 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 MRPL20Q9BYC9 149 aaKnown RBP9.22□□□□□ -0.93
LDLR-208ENST00000558518 TMEM191AQ9H0A3 160 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 SMIM27A0A1W2PRY6 76 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 GOSR1O95249 250 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 OR5AL1P0C617 328 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 LOXL3P58215 753 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 LYZP61626 148 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 C9orf106Q8NAJ2 232 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 MEGF9Q9H1U4 602 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 PRNDQ9UKY0 176 aa9.22□□□□□ -0.93
LDLR-208ENST00000558518 FAM87AP0C7U9 286 aa9.21□□□□□ -0.93
LDLR-208ENST00000558518 ARF6P62330 175 aa9.21□□□□□ -0.93
LDLR-208ENST00000558518 SLC25A2Q9BXI2 301 aa9.21□□□□□ -0.93
LDLR-208ENST00000558518 MAP1LC3CQ9BXW4 147 aa9.21□□□□□ -0.93
LDLR-208ENST00000558518 DSCAML1Q8TD84 2053 aa9.21□□□□□ -0.94
LDLR-208ENST00000558518 HBBP68871 147 aa9.21□□□□□ -0.94
LDLR-208ENST00000558518 PSG9Q00887 426 aa9.21□□□□□ -0.94
LDLR-208ENST00000558518 MSMPQ1L6U9 139 aa9.21□□□□□ -0.94
LDLR-208ENST00000558518 INO80CQ6PI98 192 aaPredicted RBP9.21□□□□□ -0.94
LDLR-208ENST00000558518 TMUB1Q9BVT8 246 aa9.21□□□□□ -0.94
LDLR-208ENST00000558518 IGHV1-24A0A0C4DH33 117 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 VWC2LB2RUY7 222 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 SYS1-DBNDD2H3BUS1 97 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 LINC00322Q6ZN03 302 aaPredicted RBP9.2□□□□□ -0.94
LDLR-208ENST00000558518 BHLHA15Q7RTS1 189 aaPredicted RBP9.2□□□□□ -0.94
LDLR-208ENST00000558518 OR1L4Q8NGR5 311 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 GRAMD2BQ96HH9 432 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 MRPL36Q9P0J6 103 aaKnown RBP9.2□□□□□ -0.94
LDLR-208ENST00000558518 GAGE10A6NGK3 116 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 FOXE3Q13461 319 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 PRSS57Q6UWY2 283 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 GOLT1AQ6ZVE7 132 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 MRPS16Q9Y3D3 137 aaKnown RBP9.2□□□□□ -0.94
LDLR-208ENST00000558518 GAGE12BA1L429 117 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 NKX2-8O15522 239 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 TMEM11P17152 192 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 NMUP48645 174 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms