RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 OPTCQ9UBM4 332 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 RNF11Q9Y3C5 154 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 CELSR1Q9NYQ6 3014 aa-0.42□□□□□ -2.48
VPS13C-205ENST00000558088 TRPC5OSA6NMA1 111 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 C1orf196B1AJZ1 125 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 ZNF879B4DU55 563 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 F5H768 121 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 GADD45GO95257 159 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 UCHL3P15374 230 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 MAGEA2P43356 314 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 HIST2H3PS2Q5TEC6 136 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 LYG2Q86SG7 212 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 OR52R1Q8NGF1 315 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 H1FXQ92522 213 aaKnown RBP-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 LINC00052Q96N35 136 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 TP53RKQ96S44 253 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 GPER1Q99527 375 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 TREM1Q9NP99 234 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 C14orf132Q9NPU4 83 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 CMTM6Q9NX76 183 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 ZDBF2Q9HCK1 2354 aa-0.43□□□□□ -2.48
VPS13C-205ENST00000558088 PIK3R4Q99570 1358 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 UBR5O95071 2799 aaPredicted RBP-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 LOC285556D6RIA3 1793 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 A0A1B0GV50 99 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 DPRXA6NFQ7 191 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 KRT75O95678 551 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 DHFRP00374 187 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 PPYP01298 95 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 IFNA10P01566 189 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 ANP32AP39687 249 aaKnown RBP-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 FXYD4P59646 89 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 CLVS2Q5SYC1 327 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 LPCAT3Q6P1A2 487 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 DEFB125Q8N687 156 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 ANKRD29Q8N6D5 301 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 OR13C4Q8NGS5 318 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 C7orf50Q9BRJ6 194 aaKnown RBP-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 UPF3BQ9BZI7 483 aaKnown RBP-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 BCL2L10Q9HD36 194 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 FBXL12Q9NXK8 326 aa-0.44□□□□□ -2.48
VPS13C-205ENST00000558088 HIVEP3Q5T1R4 2406 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 BUB1B-PAK6H3BSN5 160 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 CRYZL1O95825 349 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 ISG15P05161 165 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 IVLP07476 585 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 CD14P08571 375 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 OR4E1P0C645 316 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 RPS12P25398 132 aaKnown RBP-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 CASP1P29466 404 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 MARCKSL1P49006 195 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 GLIPR1L1Q6UWM5 242 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 Q6ZQY7 126 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 PRR15Q8IV56 129 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 Q8N402 240 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 TET1Q8NFU7 2136 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 OR2T10Q8NGZ9 312 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 ZNF431Q8TF32 576 aaPredicted RBP-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 TOMM6Q96B49 74 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 UBAP1Q9NZ09 502 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 C3orf18Q9UK00 162 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 U3KQA8 63 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 TOPBP1Q92547 1522 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 FAM208BQ5VWN6 2430 aa-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 CHD3Q12873 2000 aaKnown RBP-0.45□□□□□ -2.48
VPS13C-205ENST00000558088 C7orf71A4D174 169 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 JMJD7-PLA2G4BH0Y9G9 81 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 HLA-DRB1P01911 266 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 TNNC2P02585 160 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 IFITM1P13164 125 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 CCL4P13236 92 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 TCL1AP56279 114 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 CDC42P60953 191 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 PMAIP1Q13794 54 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 GDPD1Q8N9F7 314 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 OR8D4Q8NGM9 314 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 FAM213BQ8TBF2 198 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 OR52A1Q9UKL2 312 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 PCTPQ9UKL6 214 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 CHCHD2Q9Y6H1 151 aaPredicted RBP-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 EVC2Q86UK5 1308 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 PIEZO1Q92508 2521 aa-0.46□□□□□ -2.48
VPS13C-205ENST00000558088 TRAV10A0A0B4J240 114 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 EXOC1LA0A1B0GW35 172 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 FABP12A6NFH5 140 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 GOLGA8KD6RF30 607 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 NDUFS6O75380 124 aaKnown RBP-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 APOEP02649 317 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 CASC2Q6XLA1 102 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 KRT222Q8N1A0 295 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 LRRC25Q8N386 305 aaPredicted RBP-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 SLC30A7Q8NEW0 376 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 OR5D14Q8NGL3 314 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 MUCL1Q96DR8 90 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 SLAMF6Q96DU3 332 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 HIST1H2BLQ99880 126 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 NIPSNAP1Q9BPW8 284 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 PRTFDC1Q9NRG1 225 aa-0.47□□□□□ -2.48
VPS13C-205ENST00000558088 DCCP43146 1447 aa-0.47□□□□□ -2.49
VPS13C-205ENST00000558088 TAF1LQ8IZX4 1826 aa-0.48□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms