RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PRRX1P54821 245 aa10.02□□□□□ -0.81
LDLR-205ENST00000557933 INO80CQ6PI98 192 aaPredicted RBP10.02□□□□□ -0.81
LDLR-205ENST00000557933 NUDT10Q8NFP7 164 aa10.02□□□□□ -0.81
LDLR-205ENST00000557933 NUDT11Q96G61 164 aa10.02□□□□□ -0.81
LDLR-205ENST00000557933 TPSG1Q9NRR2 321 aa10.02□□□□□ -0.81
LDLR-205ENST00000557933 SRRM5B3KS81 715 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 C11orf52Q96A22 123 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 SLC25A33Q9BSK2 321 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 TPPP3Q9BW30 176 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 ARHGAP32A7KAX9 2087 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 MUC21A0A0G2JKD1 596 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 MUC21A0A140T8X8 626 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 CT45A6P0DMU7 189 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 CT45A5P0DMU8 189 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 CT45A7P0DMV0 189 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 FXYD7P58549 80 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 MPV17L2Q567V2 206 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 MUC21Q5SSG8 566 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 PGLYRP4Q96LB8 373 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 SLC25A2Q9BXI2 301 aa10.01□□□□□ -0.81
LDLR-205ENST00000557933 MRPL20Q9BYC9 149 aaKnown RBP10.01□□□□□ -0.81
LDLR-205ENST00000557933 FNDC4Q9H6D8 234 aaPredicted RBP10.01□□□□□ -0.81
LDLR-205ENST00000557933 FAM181BA6NEQ2 426 aa10□□□□□ -0.81
LDLR-205ENST00000557933 COX7A2P2O60397 106 aa10□□□□□ -0.81
LDLR-205ENST00000557933 ESDP10768 282 aa10□□□□□ -0.81
LDLR-205ENST00000557933 NHLH1Q02575 133 aa10□□□□□ -0.81
LDLR-205ENST00000557933 VAMP3Q15836 100 aa10□□□□□ -0.81
LDLR-205ENST00000557933 HARBI1Q96MB7 349 aa10□□□□□ -0.81
LDLR-205ENST00000557933 NAA38Q9BRA0 125 aaKnown RBP10□□□□□ -0.81
LDLR-205ENST00000557933 ATRXP46100 2492 aa10□□□□□ -0.81
LDLR-205ENST00000557933 C8orf88P0DMB2 117 aa10□□□□□ -0.81
LDLR-205ENST00000557933 TMPRSS3P57727 454 aa10□□□□□ -0.81
LDLR-205ENST00000557933 SSX8Q7RTT4 187 aa10□□□□□ -0.81
LDLR-205ENST00000557933 PRR7Q8TB68 274 aa10□□□□□ -0.81
LDLR-205ENST00000557933 RITA1Q96K30 269 aa10□□□□□ -0.81
LDLR-205ENST00000557933 IGF2BP2-AS1Q96M15 143 aa10□□□□□ -0.81
LDLR-205ENST00000557933 TMEM167BQ9NRX6 74 aa10□□□□□ -0.81
LDLR-205ENST00000557933 TNFRSF19Q9NS68 423 aa10□□□□□ -0.81
LDLR-205ENST00000557933 SH3BGRL2Q9UJC5 107 aa10□□□□□ -0.81
LDLR-205ENST00000557933 SPAARA0A1B0GVQ0 90 aa10□□□□□ -0.81
LDLR-205ENST00000557933 PPOXP50336 477 aa10□□□□□ -0.81
LDLR-205ENST00000557933 OR1B1Q8NGR6 318 aa10□□□□□ -0.81
LDLR-205ENST00000557933 OR5B3Q8NH48 314 aa10□□□□□ -0.81
LDLR-205ENST00000557933 WASHC3Q9Y3C0 194 aa10□□□□□ -0.81
LDLR-205ENST00000557933 CBY1Q9Y3M2 126 aa10□□□□□ -0.81
LDLR-205ENST00000557933 RELQ04864 619 aaPredicted RBP9.99□□□□□ -0.81
LDLR-205ENST00000557933 WDR73Q6P4I2 378 aa9.99□□□□□ -0.81
LDLR-205ENST00000557933 H1FXQ92522 213 aaKnown RBP9.99□□□□□ -0.81
LDLR-205ENST00000557933 COMMD5Q9GZQ3 224 aa9.99□□□□□ -0.81
LDLR-205ENST00000557933 HLA-DQA1P01909 254 aa9.99□□□□□ -0.81
LDLR-205ENST00000557933 SLC25A5P05141 298 aaKnown RBP9.99□□□□□ -0.81
LDLR-205ENST00000557933 RNASE2P10153 161 aaKnown RBP9.99□□□□□ -0.81
LDLR-205ENST00000557933 PATE2Q6UY27 113 aa9.99□□□□□ -0.81
LDLR-205ENST00000557933 FLYWCH2Q96CP2 140 aaKnown RBP9.99□□□□□ -0.81
LDLR-205ENST00000557933 FAM167A-AS1Q96KT0 104 aa9.99□□□□□ -0.81
LDLR-205ENST00000557933 PAXXQ9BUH6 204 aa9.99□□□□□ -0.81
LDLR-205ENST00000557933 OSTCQ9NRP0 149 aa9.99□□□□□ -0.81
LDLR-205ENST00000557933 FOXA2Q9Y261 457 aaPredicted RBP9.99□□□□□ -0.81
LDLR-205ENST00000557933 KBTBD11-OT1A0A1B0GTJ5 212 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 KLK10O43240 276 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 RPL19P84098 196 aaKnown RBP9.98□□□□□ -0.81
LDLR-205ENST00000557933 WT1-ASQ06250 92 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 GAGE1Q13065 139 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 TCTEX1D1Q8N7M0 179 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 S4R3C0 116 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 SMIM27A0A1W2PRY6 76 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 ENSAO43768 121 aaKnown RBP9.98□□□□□ -0.81
LDLR-205ENST00000557933 LINC00614P0C842 121 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 TMEM249Q2WGJ8 235 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 LINC00305Q7Z4B0 112 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 URB1-AS1Q96HZ7 61 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 FER1L6-AS2Q96M78 137 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 TXNDC17Q9BRA2 123 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 SAP30LQ9HAJ7 183 aa9.98□□□□□ -0.81
LDLR-205ENST00000557933 DSCAML1Q8TD84 2053 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 TRGV8A0A0C4DH27 118 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 IZUMO1RA6ND01 250 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 PGPA6NDG6 321 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 OR2T8A6NH00 312 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 OR10J3Q5JRS4 329 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 RBMXL3Q8N7X1 1067 aaKnown RBP9.97□□□□□ -0.81
LDLR-205ENST00000557933 TMEM178AQ8NBL3 297 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 TMEM116Q8NCL8 245 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 LOC105371242A0A075B767 164 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 OR4C46A6NHA9 309 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 UPK2O00526 184 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 PEX7O00628 323 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 SLC25A17O43808 307 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 NUDT3O95989 172 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 FAM87AP0C7U9 286 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 UBE2G1P62253 170 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 PRCDQ00LT1 54 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 OR4C5Q8NGB2 326 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 ZNF835Q9Y2P0 537 aa9.97□□□□□ -0.81
LDLR-205ENST00000557933 A0A087X0K7 114 aa9.96□□□□□ -0.81
LDLR-205ENST00000557933 F2RL2O00254 374 aa9.96□□□□□ -0.81
LDLR-205ENST00000557933 MT-ND6P03923 174 aa9.96□□□□□ -0.81
LDLR-205ENST00000557933 TAS2R45P59539 299 aa9.96□□□□□ -0.81
LDLR-205ENST00000557933 TBR1Q16650 682 aa9.96□□□□□ -0.81
LDLR-205ENST00000557933 C10orf113Q5VZT2 155 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms