RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 Q6Q795 121 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 DEFB128Q7Z7B8 93 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 PDZD9Q8IXQ8 264 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 EXOC3-AS1Q8N2X6 119 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 SLC22A24Q8N4F4 322 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 ST20-AS1Q8NBB2 130 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 OR4C6Q8NH72 309 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 SLC25A40Q8TBP6 338 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 ACOT12Q8WYK0 555 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 MAL2Q969L2 176 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 IGF2BP2-AS1Q96M15 143 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 TP53RKQ96S44 253 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 CCL13Q99616 98 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 RTL8AQ9BWD3 113 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 LINC00470Q9BZP3 86 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 OR2H1Q9GZK4 316 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 OR2J1Q9GZK6 312 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 IMUPQ9GZP8 106 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 LPAR5Q9H1C0 372 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 MRPL16Q9NX20 251 aaKnown RBP1.9□□□□□ -2.11
TRAV28-201ENST00000557548 FBXL12Q9NXK8 326 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 TAAR3PQ9P1P4 343 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 ZNF230Q9UIE0 474 aaPredicted RBP1.9□□□□□ -2.11
TRAV28-201ENST00000557548 RPUSD1Q9UJJ7 312 aaKnown RBP1.9□□□□□ -2.11
TRAV28-201ENST00000557548 HIGD1AQ9Y241 93 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 COQ4Q9Y3A0 265 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 S4R3C0 116 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 C4AP0C0L4 1744 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 C4BP0C0L5 1744 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 DOCK9Q9BZ29 2069 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 SCN10AQ9Y5Y9 1956 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 ATRXP46100 2492 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 C5P01031 1676 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 NHSQ6T4R5 1651 aa1.9□□□□□ -2.11
TRAV28-201ENST00000557548 FAM208AQ9UK61 1670 aaKnown RBP1.9□□□□□ -2.11
TRAV28-201ENST00000557548 KIF20BQ96Q89 1820 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 ARFGEF1Q9Y6D6 1849 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 C1orf167Q5SNV9 1468 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 COL5A3P25940 1745 aaPredicted RBP1.89□□□□□ -2.11
TRAV28-201ENST00000557548 CABIN1Q9Y6J0 2220 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 TRPM1Q7Z4N2 1603 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 TRAV9-1A0A075B6T8 112 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 A0A0J9YY10 115 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 LOC102725191A0A1B0GVB3 256 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 A0A1B0GX78 115 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 DPRXA6NFQ7 191 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 FABP5P3A8MUU1 101 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 IGLL5B9A064 214 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 J3QR89 54 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 K7ERS5 55 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 GNG7O60262 68 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 DPM2O94777 84 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 IGLV3-27P01718 113 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 UCHL1P09936 223 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 SMIM10L2AP0DMW4 78 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 SMIM10L2BP0DMW5 78 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 MPV17P39210 176 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 CCR2P41597 374 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 EVX1P49640 407 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 HOXC5Q00444 222 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 OR8G1Q15617 311 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 OCIAD2Q56VL3 154 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 EBLN2Q6P2I7 272 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 SLC25A34Q6PIV7 304 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 RASL11AQ6T310 242 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 LRP11Q86VZ4 500 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 AMN1Q8IY45 258 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 C1orf174Q8IYL3 243 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 C12orf45Q8N5I9 185 aaPredicted RBP1.89□□□□□ -2.11
TRAV28-201ENST00000557548 YIPF7Q8N8F6 280 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 ZNF709Q8N972 641 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 OR4E2Q8NGC2 313 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 OR51T1Q8NGJ9 327 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 OR4A5Q8NH83 315 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 SPIN2AQ99865 258 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 SPIN2BQ9BPZ2 258 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 SHANK2-AS3Q9BTD1 123 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 OR8D2Q9GZM6 311 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 WDR61Q9GZS3 305 aaKnown RBP1.89□□□□□ -2.11
TRAV28-201ENST00000557548 TAF9BQ9HBM6 251 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 NIT2Q9NQR4 276 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 NAT8BQ9UHF3 227 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 MCTS1Q9ULC4 181 aaKnown RBP1.89□□□□□ -2.11
TRAV28-201ENST00000557548 CYSLTR1Q9Y271 337 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 AMMECR1Q9Y4X0 333 aaPredicted RBP1.89□□□□□ -2.11
TRAV28-201ENST00000557548 SRCAPQ6ZRS2 3230 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 SLIT2O94813 1529 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 UBR2Q8IWV8 1755 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 ZNF609O15014 1411 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 ANKRD50Q9ULJ7 1429 aa1.89□□□□□ -2.11
TRAV28-201ENST00000557548 PKD1L3Q7Z443 1732 aa1.88□□□□□ -2.11
TRAV28-201ENST00000557548 ANKRD26Q9UPS8 1709 aa1.88□□□□□ -2.11
TRAV28-201ENST00000557548 IBTKQ9P2D0 1353 aaPredicted RBP1.88□□□□□ -2.11
TRAV28-201ENST00000557548 DLEC1Q9Y238 1755 aa1.88□□□□□ -2.11
TRAV28-201ENST00000557548 DLG5Q8TDM6 1919 aa1.88□□□□□ -2.11
TRAV28-201ENST00000557548 TRBV20OR9-2A0A075B6H5 130 aa1.88□□□□□ -2.11
TRAV28-201ENST00000557548 IGHV3-21A0A0B4J1V1 117 aa1.88□□□□□ -2.11
TRAV28-201ENST00000557548 TRDV1A0A1B0GX56 115 aa1.88□□□□□ -2.11
TRAV28-201ENST00000557548 LINC00862A6NCI5 91 aa1.88□□□□□ -2.11
TRAV28-201ENST00000557548 COLCA2A8K830 154 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms