RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	RNASEK	Q6P5S7	137 aa	Known RBP	13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	PATE2	Q6UY27	113 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	LINC00311	Q8N616	119 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	FAM216B	Q8N7L0	139 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	OR10X1	Q8NGY0	326 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	FMC1	Q96HJ9	113 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	LINC00479	Q96M42	142 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	RPP21	Q9H633	154 aa	Known RBP	13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	SSUH2	Q9Y2M2	353 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	COX11	Q9Y6N1	276 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	IGKV1D-37	A0A075B6S9	117 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	DUX4L9	Q6RFH8	374 aa	Predicted RBP	13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	MUC15	Q8N387	334 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	NPIPB3	Q92617	1050 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	TMEM186	Q96B77	213 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	PRSS22	Q9GZN4	317 aa		13.15	□□□□□ -0.3
SHMT2-231	ENST00000557433	CFAP54	Q96N23	3096 aa		13.14	□□□□□ -0.31
SHMT2-231	ENST00000557433	OR5AL1	P0C617	328 aa		13.14	□□□□□ -0.31
SHMT2-231	ENST00000557433	PTTG1IP	P53801	180 aa		13.14	□□□□□ -0.31
SHMT2-231	ENST00000557433	UBE2V1	Q13404	147 aa		13.14	□□□□□ -0.31
SHMT2-231	ENST00000557433	VHLL	Q6RSH7	139 aa		13.14	□□□□□ -0.31
SHMT2-231	ENST00000557433	SEM1	Q6ZVN7	128 aa		13.14	□□□□□ -0.31
SHMT2-231	ENST00000557433	MLST8	Q9BVC4	326 aa		13.14	□□□□□ -0.31
SHMT2-231	ENST00000557433	FNDC4	Q9H6D8	234 aa	Predicted RBP	13.14	□□□□□ -0.31
SHMT2-231	ENST00000557433	IGLC7	A0M8Q6	106 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	NKX2-8	O15522	239 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	SLC25A5	P05141	298 aa	Known RBP	13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	TNFRSF1A	P19438	455 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433		Q56UQ5	140 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	LEMD1	Q68G75	181 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	PVRIG	Q6DKI7	326 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	LCN12	Q6JVE5	192 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	LINC00305	Q7Z4B0	112 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	C5orf17	Q8NAS9	161 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	DEFB108B	Q8NET1	73 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	C22orf15	Q8WYQ4	148 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	RND1	Q92730	232 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	TRGV9	Q99603	122 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	ASCL3	Q9NQ33	180 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	WASHC3	Q9Y3C0	194 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	TRAV34	A0A0B4J273	112 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	CRYGC	P07315	174 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	WT1-AS	Q06250	92 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	VMA21	Q3ZAQ7	101 aa		13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	ZNF474	Q6S9Z5	364 aa	Predicted RBP	13.13	□□□□□ -0.31
SHMT2-231	ENST00000557433	DSCAM	O60469	2012 aa		13.12	□□□□□ -0.31
SHMT2-231	ENST00000557433	IGLL1	P15814	213 aa		13.12	□□□□□ -0.31
SHMT2-231	ENST00000557433	MC5R	P33032	325 aa		13.12	□□□□□ -0.31
SHMT2-231	ENST00000557433	PAX2	Q02962	417 aa		13.12	□□□□□ -0.31
SHMT2-231	ENST00000557433	PRR27	Q6MZM9	219 aa		13.12	□□□□□ -0.31
SHMT2-231	ENST00000557433	NUP37	Q8NFH4	326 aa		13.12	□□□□□ -0.31
SHMT2-231	ENST00000557433	OR4F17	Q8NGA8	305 aa		13.12	□□□□□ -0.31
SHMT2-231	ENST00000557433	HEATR1	Q9H583	2144 aa	Known RBP	13.12	□□□□□ -0.31
SHMT2-231	ENST00000557433	LTA	P01374	205 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	HINT1	P49773	126 aa	Predicted RBP	13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	CAMP	P49913	170 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	ZNF137P	P52743	207 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	ATOH7	Q8N100	152 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	TECTA	O75443	2155 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	C19orf71	A6NCJ1	209 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	PGP	A6NDG6	321 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	CGB1	A6NKQ9	187 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433		K7EP13	123 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	CORT	O00230	105 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433		P01737	135 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	LGALS7	P47929	136 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	PLP1	P60201	277 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	SSBP2	P81877	361 aa	Predicted RBP	13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	RBPMS2	Q6ZRY4	209 aa	Known RBP	13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	GUCD1	Q96NT3	240 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	NDFIP1	Q9BT67	221 aa		13.11	□□□□□ -0.31
SHMT2-231	ENST00000557433	IGLV2-23	P01705	113 aa		13.1	□□□□□ -0.31
SHMT2-231	ENST00000557433	NBEAP1	P0C6P0	100 aa		13.1	□□□□□ -0.31
SHMT2-231	ENST00000557433	SSX8	Q7RTT4	187 aa		13.1	□□□□□ -0.31
SHMT2-231	ENST00000557433	DAZAP1	Q96EP5	407 aa	Known RBP	13.1	□□□□□ -0.31
SHMT2-231	ENST00000557433	CCL25	O15444	150 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	LIPF	P07098	398 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	RPS20	P60866	119 aa	Known RBP	13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	FAM120AOS	Q5T036	256 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	ZNF841	Q6ZN19	808 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	SSBP4	Q9BWG4	385 aa	Predicted RBP	13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	TMEM191A	Q9H0A3	160 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	KNTC1	P50748	2209 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	TRBV6-1	A0A0K0K1D8	114 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	OR4C46	A6NHA9	309 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433		E7EUB6	86 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	SYS1-DBNDD2	H3BUS1	97 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	CEACAM4	O75871	244 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	MOS	P00540	346 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	GPR6	P46095	362 aa	Predicted RBP	13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	GNG5	P63218	68 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	MAJIN	Q3KP22	176 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	LRRC10	Q5BKY1	277 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	ALKBH2	Q6NS38	261 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	URB1-AS1	Q96HZ7	61 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	ZNRD1	Q9P1U0	126 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	PPIAL4A	Q9Y536	164 aa		13.09	□□□□□ -0.31
SHMT2-231	ENST00000557433	VWC2L	B2RUY7	222 aa		13.08	□□□□□ -0.32
SHMT2-231	ENST00000557433	HSBP1L1	C9JCN9	74 aa		13.08	□□□□□ -0.32
SHMT2-231	ENST00000557433	NPIPB6	E9PJ23	425 aa		13.08	□□□□□ -0.32

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