RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 RASL11BQ9BPW5 248 aa9.73□□□□□ -0.85
SHMT2-230ENST00000557427 NKX6-2Q9C056 277 aaPredicted RBP9.73□□□□□ -0.85
SHMT2-230ENST00000557427 HEYLQ9NQ87 328 aaPredicted RBP9.73□□□□□ -0.85
SHMT2-230ENST00000557427 FKBP11Q9NYL4 201 aa9.73□□□□□ -0.85
SHMT2-230ENST00000557427 C9JQL5 133 aa9.72□□□□□ -0.85
SHMT2-230ENST00000557427 KBTBD11O94819 623 aa9.72□□□□□ -0.85
SHMT2-230ENST00000557427 SNAPINO95295 136 aa9.72□□□□□ -0.85
SHMT2-230ENST00000557427 IFNA10P01566 189 aa9.72□□□□□ -0.85
SHMT2-230ENST00000557427 MC5RP33032 325 aa9.72□□□□□ -0.85
SHMT2-230ENST00000557427 HOXA1P49639 335 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-230ENST00000557427 ATP5IP56385 69 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-230ENST00000557427 RAB11AP62491 216 aa9.72□□□□□ -0.85
SHMT2-230ENST00000557427 DLK1P80370 383 aa9.72□□□□□ -0.85
SHMT2-230ENST00000557427 ATRAIDQ6UW56 229 aa9.72□□□□□ -0.85
SHMT2-230ENST00000557427 Q8N6K4 173 aa9.72□□□□□ -0.85
SHMT2-230ENST00000557427 OR4A5Q8NH83 315 aa9.72□□□□□ -0.85
SHMT2-230ENST00000557427 ENY2Q9NPA8 101 aa9.72□□□□□ -0.85
SHMT2-230ENST00000557427 RPRMQ9NS64 109 aa9.72□□□□□ -0.85
SHMT2-230ENST00000557427 ZMAT5Q9UDW3 170 aaKnown RBP9.72□□□□□ -0.85
SHMT2-230ENST00000557427 SRRM4A7MD48 611 aaKnown RBP9.71□□□□□ -0.86
SHMT2-230ENST00000557427 PRSS46E5RG02 174 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 C17orf112F2Z3M2 114 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 MPDU1O75352 247 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 IGHG2P01859 326 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 MBP02144 154 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 IGKV1-16P04430 117 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 FGF7P21781 194 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 PRCDQ00LT1 54 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 GUCA2BQ16661 112 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 Q8N9W7 124 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 OR5B3Q8NH48 314 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 VSTM2AQ8TAG5 236 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 FLYWCH2Q96CP2 140 aaKnown RBP9.71□□□□□ -0.86
SHMT2-230ENST00000557427 P2RX4Q99571 388 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 EIF5A2Q9GZV4 153 aaKnown RBP9.71□□□□□ -0.86
SHMT2-230ENST00000557427 WDR83OSQ9Y284 106 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 WASHC3Q9Y3C0 194 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 OR51B2Q9Y5P1 312 aa9.71□□□□□ -0.86
SHMT2-230ENST00000557427 RBFOX3A6NFN3 312 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 FNDC10F2Z333 226 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 INS-IGF2F8WCM5 200 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 H7C2Y5 167 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 SAA1P0DJI8 122 aaPredicted RBP9.7□□□□□ -0.86
SHMT2-230ENST00000557427 CNTFRP26992 372 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 CCL20P78556 96 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 BTN1A1Q13410 526 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 PMS2P11Q13670 270 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 ZNF506Q5JVG8 444 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 SLC24A4Q8NFF2 622 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 TMEM167AQ8TBQ9 72 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 SFT2D1Q8WV19 159 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 HARBI1Q96MB7 349 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 NPCDR1Q9BY65 106 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 EDA2RQ9HAV5 297 aa9.7□□□□□ -0.86
SHMT2-230ENST00000557427 KIAA1109Q2LD37 5005 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 TEX50A0A1B0GTY4 177 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 DNASE2O00115 360 aaPredicted RBP9.69□□□□□ -0.86
SHMT2-230ENST00000557427 RRHO14718 337 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 NPY1RP25929 384 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 PPT1P50897 306 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 SLC35B1P78383 322 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 MMDQ15546 238 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 ZNF726P1Q15940 193 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 ACSM6Q6P461 480 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 C8orf86Q6ZUL3 223 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 ZNF709Q8N972 641 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 TMEM170AQ8WVE7 144 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 DUX3Q96PT4 197 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 HSPB9Q9BQS6 159 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 SLC35B3Q9H1N7 401 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 VSIRQ9H7M9 311 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 PLEKHA3Q9HB20 300 aa9.69□□□□□ -0.86
SHMT2-230ENST00000557427 AP4M1O00189 453 aa9.68□□□□□ -0.86
SHMT2-230ENST00000557427 HSPB1P04792 205 aaKnown RBP9.68□□□□□ -0.86
SHMT2-230ENST00000557427 LGALS7P47929 136 aa9.68□□□□□ -0.86
SHMT2-230ENST00000557427 RPS16P62249 146 aaKnown RBP9.68□□□□□ -0.86
SHMT2-230ENST00000557427 BSXQ3C1V8 233 aa9.68□□□□□ -0.86
SHMT2-230ENST00000557427 VMA21Q3ZAQ7 101 aa9.68□□□□□ -0.86
SHMT2-230ENST00000557427 KHDC3LQ587J8 217 aa9.68□□□□□ -0.86
SHMT2-230ENST00000557427 LCNL1Q6ZST4 164 aa9.68□□□□□ -0.86
SHMT2-230ENST00000557427 KCNIP2Q9NS61 270 aa9.68□□□□□ -0.86
SHMT2-230ENST00000557427 ALMS1Q8TCU4 4167 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 CTXND1A0A1B0GTU2 59 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 LOC102723971A0A1B0GUV8 181 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 A0A1B0GV50 99 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 MAP1LC3B2A6NCE7 125 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 NDUFS6O75380 124 aaKnown RBP9.67□□□□□ -0.86
SHMT2-230ENST00000557427 CA2P00918 260 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 IGLV2-23P01705 113 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 IFNA4P05014 189 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 MYCNOSP40205 109 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 ELLP55199 621 aaPredicted RBP9.67□□□□□ -0.86
SHMT2-230ENST00000557427 RPL8P62917 257 aaKnown RBP9.67□□□□□ -0.86
SHMT2-230ENST00000557427 ICAM4Q14773 271 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 ACOT6Q3I5F7 207 aaPredicted RBP9.67□□□□□ -0.86
SHMT2-230ENST00000557427 C2orf83Q53S99 150 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 FFAR4Q5NUL3 377 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 TEX38Q6PEX7 206 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 CLRN3Q8NCR9 226 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 OR10G4Q8NGN3 311 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms