RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 SFXN3Q9BWM7 321 aa9.9□□□□□ -0.83
CCDC88C-211ENST00000556726 KMT2EQ8IZD2 1858 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 K7EN84 100 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 HYPMO75409 117 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 HINT1P49773 126 aaPredicted RBP9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 DMXL1Q9Y485 3027 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 IGHV1-69-2A0A0G2JMI3 117 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 J3KRW8 73 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 ISLRO14498 428 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 ADIPOQQ15848 244 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 OR5R1Q8NH85 324 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 RASL11BQ9BPW5 248 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 SELENOKQ9Y6D0 94 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 LOC389332A0A1B0GUA5 103 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 MBD3L4A6NDZ8 208 aaPredicted RBP9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 MBD3L3A6NE82 208 aaPredicted RBP9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 MBD3L5A6NJ08 208 aaPredicted RBP9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 GGTLC3B5MD39 225 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 E7EUB6 86 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 IGLV1-44P01699 117 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 SPATA45Q537H7 98 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 ZNF788Q6ZQV5 615 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 MBD3L2Q8NHZ7 208 aaPredicted RBP9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 YPEL4Q96NS1 127 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 ADAMTS20P59510 1910 aa9.89□□□□□ -0.83
CCDC88C-211ENST00000556726 IGKV3-7A0A075B6H7 116 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 F2RL2O00254 374 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 HTR1DP28221 377 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 WDR73Q6P4I2 378 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 FAM57AQ8TBR7 257 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 LINC00312Q9Y6C7 94 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 USP9YO00507 2555 aaPredicted RBP9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 IGHV3-49A0A0A0MS15 119 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 CCL21O00585 134 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 NBEAP1P0C6P0 100 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 PERPQ96FX8 193 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 NDUFAF3Q9BU61 184 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 FOXA2Q9Y261 457 aaPredicted RBP9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 IGKV1OR2-108A0A075B7D4 117 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 HIGD1CA8MV81 97 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 HSBP1L1C9JCN9 74 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 CORTO00230 105 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 RNASE2P10153 161 aaKnown RBP9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 PRRX1P54821 245 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 FAM168AQ92567 244 aa9.88□□□□□ -0.83
CCDC88C-211ENST00000556726 PPIAL4CA0A0B4J2A2 164 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 CGB1A6NKQ9 187 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 PEX7O00628 323 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 PPIAL4GP0DN37 164 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 FCGR2BP31994 310 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 OSR1Q8TAX0 266 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 RNF2Q99496 336 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 NRN1Q9NPD7 142 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 SNAI2O43623 268 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 C21orf62-AS1Q17RA5 79 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 SSX8Q7RTT4 187 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 TXNDC17Q9BRA2 123 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 TMEM14BQ9NUH8 114 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 GNG7O60262 68 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 CT45A10P0DMU9 189 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 ZNF138P52744 262 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 DMRTC2Q8IXT2 367 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 EXOC3-AS1Q8N2X6 119 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 RNASE6Q93091 150 aaKnown RBP9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 RITA1Q96K30 269 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 CLEC5AQ9NY25 188 aa9.87□□□□□ -0.83
CCDC88C-211ENST00000556726 KALRNO60229 2985 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 MYO9AB2RTY4 2548 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 H0YJW9 148 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 WT1-ASQ06250 92 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 OR52E5Q8NH55 327 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 OR8B2Q96RD0 313 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 SH2D7A6NKC9 451 aaPredicted RBP9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 SLC25A48Q6ZT89 311 aaKnown RBP9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 MUC15Q8N387 334 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 POLR3KQ9Y2Y1 108 aaPredicted RBP9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 AKAP13Q12802 2813 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 IGHV3OR16-10A0A075B7F0 116 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 IGHV3-66A0A0C4DH42 116 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 A8MWP6 167 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 HIST1H1EP10412 219 aaKnown RBP9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 MAS1LP35410 378 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 PPOXP50336 477 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 RPL11P62913 178 aaKnown RBP9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 FOXL1Q12952 345 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 TMUB1Q9BVT8 246 aa9.86□□□□□ -0.83
CCDC88C-211ENST00000556726 PCSK5Q92824 1860 aa9.85□□□□□ -0.83
CCDC88C-211ENST00000556726 ZFYVE26Q68DK2 2539 aa9.85□□□□□ -0.83
CCDC88C-211ENST00000556726 AMY1AP04745 511 aa9.85□□□□□ -0.83
CCDC88C-211ENST00000556726 C1orf174Q8IYL3 243 aa9.85□□□□□ -0.83
CCDC88C-211ENST00000556726 SRSF12Q8WXF0 261 aaKnown RBP9.85□□□□□ -0.83
CCDC88C-211ENST00000556726 TIMD4Q96H15 378 aa9.85□□□□□ -0.83
CCDC88C-211ENST00000556726 PARD6GQ9BYG4 376 aaPredicted RBP9.85□□□□□ -0.83
CCDC88C-211ENST00000556726 HIGD1AQ9Y241 93 aa9.85□□□□□ -0.83
CCDC88C-211ENST00000556726 TACC2O95359 2948 aa9.85□□□□□ -0.83
CCDC88C-211ENST00000556726 PAFAH1B2P68402 229 aa9.85□□□□□ -0.83
CCDC88C-211ENST00000556726 KLRD1Q13241 179 aa9.85□□□□□ -0.83
CCDC88C-211ENST00000556726 OR4F17Q8NGA8 305 aa9.85□□□□□ -0.83
CCDC88C-211ENST00000556726 FNDC4Q9H6D8 234 aaPredicted RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms