RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PSTPIP2Q9H939 334 aa0.43□□□□□ -2.34
SCFD1-216ENST00000555550 CCDC88AQ3V6T2 1871 aa0.43□□□□□ -2.34
SCFD1-216ENST00000555550 KIF1BO60333 1816 aa0.43□□□□□ -2.34
SCFD1-216ENST00000555550 CACNA1BQ00975 2339 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 PLXNA4Q9HCM2 1894 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 TRBV19A0A075B6N1 114 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 SMIM23A6NLE4 172 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 HMSDA8MTL9 139 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 KLRC4O43908 158 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 PDE6DO43924 150 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 SERPINA1P01009 418 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 IGLV1-51P01701 117 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 MSNP26038 577 aaKnown RBP0.42□□□□□ -2.34
SCFD1-216ENST00000555550 FKBP2P26885 142 aaKnown RBP0.42□□□□□ -2.34
SCFD1-216ENST00000555550 SERPINB9P50453 376 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 CEBPGP53567 150 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 EMP1P54849 157 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 HSPE1P61604 102 aaKnown RBP0.42□□□□□ -2.34
SCFD1-216ENST00000555550 AP1S1P61966 158 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 SPANXN3Q5MJ09 141 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 C10orf55Q5SWW7 151 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 PATE2Q6UY27 113 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 ZNF705AQ6ZN79 300 aaPredicted RBP0.42□□□□□ -2.34
SCFD1-216ENST00000555550 C7orf65Q6ZTY9 151 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 SLC36A1Q7Z2H8 476 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 DEFB128Q7Z7B8 93 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 KRT222Q8N1A0 295 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 TBC1D19Q8N5T2 526 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 ANKRD29Q8N6D5 301 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 SIGLECL1Q8N7X8 197 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 PXT1Q8NFP0 134 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 OR8B3Q8NGG8 313 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 OR8D4Q8NGM9 314 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 CDC26Q8NHZ8 85 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 STAG3L4Q8TBR4 150 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 C11orf40Q8WZ69 217 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 CHMP6Q96FZ7 201 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 C2orf50Q96LR7 162 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 CARD19Q96LW7 228 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 SIGMAR1Q99720 223 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 PRRT1Q99946 306 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 ADAT1Q9BUB4 502 aaKnown RBP0.42□□□□□ -2.34
SCFD1-216ENST00000555550 CHCHD2Q9Y6H1 151 aaPredicted RBP0.42□□□□□ -2.34
SCFD1-216ENST00000555550 MCM3APO60318 1980 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 KIF13BQ9NQT8 1826 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 RFX7Q2KHR2 1363 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 RIMBP3CA6NJZ7 1639 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 RIMBP3BA6NNM3 1639 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 RIMBP3Q9UFD9 1639 aa0.42□□□□□ -2.34
SCFD1-216ENST00000555550 SCN10AQ9Y5Y9 1956 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 HEATR5BQ9P2D3 2071 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 TRAV9-1A0A075B6T8 112 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 C2orf70A6NJV1 201 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 TMEM212A6NML5 194 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 LYZL6O75951 148 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 OR2B3O76000 313 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 TNNC2P02585 160 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 C8GP07360 202 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 RBP1P09455 135 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 ASAH2BP0C7U1 165 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 ROMO1P60602 79 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 CNBPP62633 177 aaKnown RBP0.41□□□□□ -2.34
SCFD1-216ENST00000555550 REEP5Q00765 189 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 STX5Q13190 355 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 MIR17HGQ75NE6 70 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 AAED1Q7RTV5 226 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 PPP1R14BQ96C90 147 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 DCUN1D1Q96GG9 259 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 DOHHQ9BU89 302 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 C9orf16Q9BUW7 83 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 MIXL1Q9H2W2 232 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 ACER3Q9NUN7 267 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 IL20Q9NYY1 176 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 SMPXQ9UHP9 88 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 TIMM9Q9Y5J7 89 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 NISCHQ9Y2I1 1504 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 ABCA13Q86UQ4 5058 aa0.41□□□□□ -2.34
SCFD1-216ENST00000555550 SONP18583 2426 aaKnown RBP0.4□□□□□ -2.34
SCFD1-216ENST00000555550 ARFGEF3Q5TH69 2177 aa0.4□□□□□ -2.34
SCFD1-216ENST00000555550 RIC1Q4ADV7 1423 aa0.4□□□□□ -2.34
SCFD1-216ENST00000555550 FMN1Q68DA7 1419 aa0.4□□□□□ -2.34
SCFD1-216ENST00000555550 hCG_1818297A0A087WSY0 165 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 LOC110117498A0A087WWA1 95 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 A8MT66 165 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 SLC22A1O15245 554 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 MFSD11O43934 449 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 PIAS1O75925 651 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 ATP5HO75947 161 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 IFNA10P01566 189 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 HTR1AP08908 422 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 TRGC1P0CF51 173 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 NFYAP23511 347 aaPredicted RBP0.4□□□□□ -2.35
SCFD1-216ENST00000555550 ANP32AP39687 249 aaKnown RBP0.4□□□□□ -2.35
SCFD1-216ENST00000555550 PPP1R2P41236 205 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 INSL3P51460 131 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 RRN3P1Q2M238 152 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 DEFB113Q30KQ7 82 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 PPP1R2P3Q6NXS1 205 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 GOLT1AQ6ZVE7 132 aa0.4□□□□□ -2.35
SCFD1-216ENST00000555550 OR13D1Q8NGV5 346 aa0.4□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms