RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 IGHV3-66A0A0C4DH42 116 aa10.33□□□□□ -0.76
COL4A6-209ENST00000545689 SRSF1Q07955 248 aaKnown RBP eCLIP10.33□□□□□ -0.76
COL4A6-209ENST00000545689 TIMM23O14925 209 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 ACTL10Q5JWF8 245 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 COLCA1Q6ZS62 124 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 C7orf69Q9H7B7 122 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 IGHV3OR16-13A0A075B7E8 117 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 IGHV3-74A0A0B4J1X5 117 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 LINC00587B1AMM8 73 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 RNASE4P34096 147 aaKnown RBP10.32□□□□□ -0.76
COL4A6-209ENST00000545689 ORMDL2Q53FV1 153 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 GCSAMLQ5JQS6 135 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 LINC01551Q86U37 167 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 CXCL1P09341 107 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 MRPL16Q9NX20 251 aaKnown RBP10.32□□□□□ -0.76
COL4A6-209ENST00000545689 TMEM200BQ69YZ2 307 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 SRSF8Q9BRL6 282 aaKnown RBP10.32□□□□□ -0.76
COL4A6-209ENST00000545689 TFF1P04155 84 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 RHOGP84095 191 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 SLC25A2Q9BXI2 301 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 MS4A6AQ9H2W1 248 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 SMPXQ9UHP9 88 aa10.32□□□□□ -0.76
COL4A6-209ENST00000545689 FAM181BA6NEQ2 426 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 DSCR9P59020 149 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 RPP25LQ8N5L8 163 aaKnown RBP10.31□□□□□ -0.76
COL4A6-209ENST00000545689 ST20Q9HBF5 79 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 GLRX5Q86SX6 157 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 NIT1Q86X76 327 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 C5orf30Q96GV9 206 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 DUX3Q96PT4 197 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 NPFFR1Q9GZQ6 430 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 M0R1W7 72 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 C3orf36Q3SXR2 165 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 NUDT10Q8NFP7 164 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 NUDT11Q96G61 164 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 GAFA1Q96PS6 74 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 PLXNA4Q9HCM2 1894 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 C5orf63A6NC05 138 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 TMEM50AO95807 157 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 CLDN16Q9Y5I7 305 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 A0A1B0GWJ7 208 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 TPTE2P1Q5T6R2 138 aa10.31□□□□□ -0.76
COL4A6-209ENST00000545689 H0YJW9 148 aa10.3□□□□□ -0.76
COL4A6-209ENST00000545689 SUMO2P61956 95 aaKnown RBP10.3□□□□□ -0.76
COL4A6-209ENST00000545689 LYPD1Q8N2G4 141 aa10.3□□□□□ -0.76
COL4A6-209ENST00000545689 IGHV3-49A0A0A0MS15 119 aa10.3□□□□□ -0.76
COL4A6-209ENST00000545689 DPM2O94777 84 aa10.3□□□□□ -0.76
COL4A6-209ENST00000545689 MRPL52Q86TS9 123 aaKnown RBP10.3□□□□□ -0.76
COL4A6-209ENST00000545689 DMRTA2Q96SC8 542 aa10.3□□□□□ -0.76
COL4A6-209ENST00000545689 NLRC5Q86WI3 1866 aa10.3□□□□□ -0.76
COL4A6-209ENST00000545689 IGHV1-3A0A0C4DH29 117 aa10.3□□□□□ -0.76
COL4A6-209ENST00000545689 NCOR1P1Q9H4R4 102 aa10.3□□□□□ -0.76
COL4A6-209ENST00000545689 PGPEP1LA6NFU8 196 aa10.3□□□□□ -0.76
COL4A6-209ENST00000545689 COQ2Q96H96 371 aa10.3□□□□□ -0.76
COL4A6-209ENST00000545689 SSBP4Q9BWG4 385 aaPredicted RBP10.3□□□□□ -0.76
COL4A6-209ENST00000545689 PRSS22Q9GZN4 317 aa10.3□□□□□ -0.76
COL4A6-209ENST00000545689 OR10W1Q8NGF6 305 aa10.3□□□□□ -0.76
COL4A6-209ENST00000545689 MGAMO43451 1857 aa10.3□□□□□ -0.76
COL4A6-209ENST00000545689 TNFSF13O75888 250 aa10.29□□□□□ -0.76
COL4A6-209ENST00000545689 SPACA3Q8IXA5 215 aa10.29□□□□□ -0.76
COL4A6-209ENST00000545689 AMBPP02760 352 aa10.29□□□□□ -0.76
COL4A6-209ENST00000545689 TRGV11A0A075B6L2 103 aa10.29□□□□□ -0.76
COL4A6-209ENST00000545689 PF4P02776 101 aa10.29□□□□□ -0.76
COL4A6-209ENST00000545689 ZNF672Q499Z4 452 aaPredicted RBP10.29□□□□□ -0.76
COL4A6-209ENST00000545689 SPSB3Q6PJ21 355 aa10.29□□□□□ -0.76
COL4A6-209ENST00000545689 IGKV3-20P01619 116 aa10.29□□□□□ -0.76
COL4A6-209ENST00000545689 CDKN1AP38936 164 aa10.29□□□□□ -0.76
COL4A6-209ENST00000545689 C21orf62-AS1Q17RA5 79 aa10.29□□□□□ -0.76
COL4A6-209ENST00000545689 CABIN1Q9Y6J0 2220 aa10.29□□□□□ -0.76
COL4A6-209ENST00000545689 WNT2P09544 360 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 SLC25A39Q9BZJ4 359 aaPredicted RBP10.28□□□□□ -0.76
COL4A6-209ENST00000545689 SPCS1Q9Y6A9 102 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 PAX8Q06710 450 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 RNF144BQ7Z419 303 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 MRAP2Q96G30 205 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 JKAMPQ9P055 326 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 C15orf62A8K5M9 175 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 VDAC2P45880 294 aaPredicted RBP10.28□□□□□ -0.76
COL4A6-209ENST00000545689 DNAL4O96015 105 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 TCRAP04437 139 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 PLAURQ03405 335 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 SPATA31B1PQ5VZV4 182 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 PTPRDP23468 1912 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 TRAV5A0A0B4J249 113 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 LINC00473A8K010 186 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 SIGLEC15Q6ZMC9 328 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 MRPL27Q9P0M9 148 aaKnown RBP10.28□□□□□ -0.76
COL4A6-209ENST00000545689 CYSLTR1Q9Y271 337 aa10.28□□□□□ -0.76
COL4A6-209ENST00000545689 PLXNA2O75051 1894 aa10.27□□□□□ -0.76
COL4A6-209ENST00000545689 KNTC1P50748 2209 aa10.27□□□□□ -0.76
COL4A6-209ENST00000545689 WDR81Q562E7 1941 aa10.27□□□□□ -0.76
COL4A6-209ENST00000545689 HGFACQ04756 655 aa10.27□□□□□ -0.76
COL4A6-209ENST00000545689 IGKV1D-17A0A075B6S4 117 aa10.27□□□□□ -0.77
COL4A6-209ENST00000545689 MLNRO43193 412 aa10.27□□□□□ -0.77
COL4A6-209ENST00000545689 EFNA4P52798 201 aa10.27□□□□□ -0.77
COL4A6-209ENST00000545689 TTC32Q5I0X7 151 aa10.27□□□□□ -0.77
COL4A6-209ENST00000545689 SEC11AP67812 179 aa10.27□□□□□ -0.77
COL4A6-209ENST00000545689 ST6GALNAC6Q969X2 333 aa10.27□□□□□ -0.77
COL4A6-209ENST00000545689 SPTBP11277 2137 aa10.27□□□□□ -0.77
COL4A6-209ENST00000545689 TRAV41A0A0B4J266 112 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms