RNA–Protein interactions for RNA: ENST00000544584.1

CLSTN3-215, Transcript of calsyntenin 3, human

TSL 4

Gene CLSTN3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLSTN3-215	ENST00000544584	WDR89	Q96FK6	387 aa	Predicted RBP	4.23	□□□□□ -1.73
CLSTN3-215	ENST00000544584	TM2D3	Q9BRN9	247 aa		4.23	□□□□□ -1.73
CLSTN3-215	ENST00000544584	CCDC32	Q9BV29	185 aa		4.23	□□□□□ -1.73
CLSTN3-215	ENST00000544584	RHPN1-AS1	Q9BWJ2	59 aa		4.23	□□□□□ -1.73
CLSTN3-215	ENST00000544584	C19orf73	Q9NVV2	129 aa		4.23	□□□□□ -1.73
CLSTN3-215	ENST00000544584	HSPB7	Q9UBY9	170 aa		4.23	□□□□□ -1.73
CLSTN3-215	ENST00000544584	FBXL17	Q9UF56	701 aa		4.23	□□□□□ -1.73
CLSTN3-215	ENST00000544584	PAIP2B	Q9ULR5	123 aa	Known RBP	4.23	□□□□□ -1.73
CLSTN3-215	ENST00000544584	PUS1	Q9Y606	427 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
CLSTN3-215	ENST00000544584	DNAH7	Q8WXX0	4024 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	ZFP92	A6NM28	416 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	DBX1	A6NMT0	343 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	SNRPGP15	A8MWD9	76 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	CHEK1	O14757	476 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	SYNGR2	O43760	224 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	TMEM50A	O95807	157 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	HNRNPC	P07910	306 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	PVALB	P20472	110 aa	Predicted RBP	4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	SPINK9	Q5DT21	86 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	UNQ9165/PRO28630	Q6UXU0	137 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	C19orf35	Q6ZS72	473 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	LYZL2	Q7Z4W2	148 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	HAPLN4	Q86UW8	402 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584		Q8N1Y9	231 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	DEFB125	Q8N687	156 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	MUC7	Q8TAX7	377 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	TRIM63	Q969Q1	353 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	PPP1R14B	Q96C90	147 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	CITED4	Q96RK1	184 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	CHRDL1	Q9BU40	450 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	WDR12	Q9GZL7	423 aa	Known RBP	4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	SRR	Q9GZT4	340 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	RBM38	Q9H0Z9	239 aa	Known RBP	4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	MLX	Q9UH92	298 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	RABAC1	Q9UI14	185 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	TP53TG1	Q9Y2A0	90 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	STRAP	Q9Y3F4	350 aa	Known RBP	4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	DMRT1	Q9Y5R6	373 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584		V9GYH0	126 aa		4.22	□□□□□ -1.73
CLSTN3-215	ENST00000544584	CSMD3	Q7Z407	3707 aa		4.21	□□□□□ -1.73
CLSTN3-215	ENST00000544584	FAM240B	A0A1B0GVZ2	78 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	IZUMO1R	A6ND01	250 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	NDUFB6	O95139	128 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	CD7	P09564	240 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	OR4E1	P0C645	316 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	CRYBB3	P26998	211 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	ADM	P35318	185 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	ID1	P41134	155 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	NKX2-1	P43699	371 aa	Predicted RBP	4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	RND2	P52198	227 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	MFAP2	P55001	183 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	DEFA1	P59665	94 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	DEFA3	P59666	94 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	RAB31	Q13636	194 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	IZUMO4	Q1ZYL8	232 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	BSX	Q3C1V8	233 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	PVRIG	Q6DKI7	326 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	OR8G2P	Q6IF36	304 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	TOMM20L	Q6UXN7	152 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584		Q6ZWC4	215 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	TCF24	Q7RTU0	167 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	STH	Q8IWL8	128 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	OR51G1	Q8NGK1	321 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	GATAD1	Q8WUU5	269 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	NPIPB3	Q92617	1050 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	ACY3	Q96HD9	319 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	GPR82	Q96P67	336 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	RBKS	Q9H477	322 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	VSIR	Q9H7M9	311 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	SEPSECS	Q9HD40	501 aa	Known RBP	4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	BATF3	Q9NR55	127 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	STAB2	Q8WWQ8	2551 aa		4.21	□□□□□ -1.74
CLSTN3-215	ENST00000544584	C9orf170	A2RU37	121 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	MPTX1	A8MV57	137 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584		L7N2F9	121 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	LYRM1	O43325	122 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	ZNF207	O43670	478 aa	Known RBP	4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	TOMM40	O96008	361 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	RLN2	P04090	185 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	IL4	P05112	153 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	HOXB5	P09067	269 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	GALR1	P47211	349 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	P2RY1	P47900	373 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	MEOX2	P50222	304 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	TAS2R30	P59541	319 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	SELENOT	P62341	195 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	VAMP2	P63027	116 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	AKR1C1	Q04828	323 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	PPP1R1A	Q13522	171 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	ZNF79	Q15937	498 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	CASC10	Q5T4H9	136 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	C1orf194	Q5T5A4	169 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	PRSS54	Q6PEW0	395 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584		Q6ZRM9	215 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	LYG2	Q86SG7	212 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	BPIFC	Q8NFQ6	507 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	STXBP6	Q8NFX7	210 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	LHFPL5	Q8TAF8	219 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	RNF125	Q96EQ8	232 aa		4.2	□□□□□ -1.74
CLSTN3-215	ENST00000544584	RAB40C	Q96S21	281 aa		4.2	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms