RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 BRD3OSQ6XYD6 125 aa11.51□□□□□ -0.57
CLIP1-216ENST00000541410 THAP8Q8NA92 274 aa11.51□□□□□ -0.57
CLIP1-216ENST00000541410 OR5AU1Q8NGC0 362 aa11.51□□□□□ -0.57
CLIP1-216ENST00000541410 PDE6DO43924 150 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 COL8A1P27658 744 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 RPS10P46783 165 aaKnown RBP11.5□□□□□ -0.57
CLIP1-216ENST00000541410 UBE2E1P51965 193 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 LEMD1Q68G75 181 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 ETFRF1Q6IPR1 90 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 C16orf82Q7Z2V1 217 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 C10orf105Q8TEF2 133 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 USP9YO00507 2555 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-216ENST00000541410 CENPVL3A0A0U1RRI6 287 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 CLN5O75503 358 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 C8orf88P0DMB2 117 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 MINOS1Q5TGZ0 78 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 LINC00305Q7Z4B0 112 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 FAM167A-AS1Q96KT0 104 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 SOX21Q9Y651 276 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-216ENST00000541410 MINOS1-NBL1R4GNA1 71 aa11.5□□□□□ -0.57
CLIP1-216ENST00000541410 I3L2K1 104 aa11.49□□□□□ -0.57
CLIP1-216ENST00000541410 CTRB1P17538 263 aa11.49□□□□□ -0.57
CLIP1-216ENST00000541410 ASPHD1Q5U4P2 390 aa11.49□□□□□ -0.57
CLIP1-216ENST00000541410 PVRIGQ6DKI7 326 aa11.49□□□□□ -0.57
CLIP1-216ENST00000541410 CTRB2Q6GPI1 263 aa11.49□□□□□ -0.57
CLIP1-216ENST00000541410 CLEC2AQ6UVW9 174 aa11.49□□□□□ -0.57
CLIP1-216ENST00000541410 TMEM116Q8NCL8 245 aa11.49□□□□□ -0.57
CLIP1-216ENST00000541410 C22orf15Q8WYQ4 148 aa11.49□□□□□ -0.57
CLIP1-216ENST00000541410 ELOVL1Q9BW60 279 aa11.49□□□□□ -0.57
CLIP1-216ENST00000541410 PTPN13Q12923 2485 aa11.49□□□□□ -0.57
CLIP1-216ENST00000541410 B4DEV8 164 aa11.49□□□□□ -0.57
CLIP1-216ENST00000541410 FLI1Q01543 452 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-216ENST00000541410 UBR5O95071 2799 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-216ENST00000541410 ABCA12Q86UK0 2595 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 C1orf196B1AJZ1 125 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 H3BTX0 84 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 CLDN34H7C241 214 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 NPFFO15130 113 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 IGHV3-23P01764 117 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 CRYBB3P26998 211 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 TAS2R45P59539 299 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 SUMO1P63165 101 aaKnown RBP11.48□□□□□ -0.57
CLIP1-216ENST00000541410 UBE2L3P68036 154 aaKnown RBP11.48□□□□□ -0.57
CLIP1-216ENST00000541410 TIGITQ495A1 244 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 PQLC2Q6ZP29 291 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 Q8N6K4 173 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 ARPC1AQ92747 370 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 MALSU1Q96EH3 234 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 TRAV40A0A0B4J280 105 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 GGTLC3B5MD39 225 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 K7EIM0 57 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 LINC01551Q86U37 167 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 HSPB9Q9BQS6 159 aa11.48□□□□□ -0.57
CLIP1-216ENST00000541410 F6UZH7 168 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 CORTO00230 105 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 PSG1P11464 419 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 LYZP61626 148 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 TMEM219Q86XT9 240 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 Q8N9W7 124 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 RBM14Q96PK6 669 aaKnown RBP11.47□□□□□ -0.57
CLIP1-216ENST00000541410 SPOCK3Q9BQ16 436 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 IGLC1P0CG04 106 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 FAM106CPP0CH98 169 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 FOLR2P14207 255 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 BPIFB3P59826 476 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 RAB5BP61020 215 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 SELENOTP62341 195 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 ZNF562Q6V9R5 426 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 BLNKQ8WV28 456 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 PFDN5Q99471 154 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 TRGV9Q99603 122 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 TMEM167BQ9NRX6 74 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 TBL2Q9Y4P3 447 aaKnown RBP11.47□□□□□ -0.57
CLIP1-216ENST00000541410 KLF2Q9Y5W3 355 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-216ENST00000541410 ZANQ9Y493 2812 aa11.47□□□□□ -0.57
CLIP1-216ENST00000541410 OOSP1A8MZH6 123 aa11.46□□□□□ -0.57
CLIP1-216ENST00000541410 PRB4P10163 310 aaPredicted RBP11.46□□□□□ -0.57
CLIP1-216ENST00000541410 MAPK1IP1LQ8NDC0 245 aa11.46□□□□□ -0.57
CLIP1-216ENST00000541410 OR1L4Q8NGR5 311 aa11.46□□□□□ -0.57
CLIP1-216ENST00000541410 OCC1Q8TAD7 63 aa11.46□□□□□ -0.57
CLIP1-216ENST00000541410 PAXXQ9BUH6 204 aa11.46□□□□□ -0.57
CLIP1-216ENST00000541410 C19orf24Q9BVV8 132 aa11.46□□□□□ -0.57
CLIP1-216ENST00000541410 MRPL32Q9BYC8 188 aaKnown RBP11.46□□□□□ -0.57
CLIP1-216ENST00000541410 IGHV7-81A0A0B4J1V7 117 aa11.46□□□□□ -0.58
CLIP1-216ENST00000541410 LINC01548A6NM66 108 aa11.46□□□□□ -0.58
CLIP1-216ENST00000541410 VWC2LB2RUY7 222 aa11.46□□□□□ -0.58
CLIP1-216ENST00000541410 H7BYZ3 331 aa11.46□□□□□ -0.58
CLIP1-216ENST00000541410 RPL35P42766 123 aaKnown RBP11.46□□□□□ -0.58
CLIP1-216ENST00000541410 PAX8Q06710 450 aa11.46□□□□□ -0.58
CLIP1-216ENST00000541410 EBI3Q14213 229 aa11.46□□□□□ -0.58
CLIP1-216ENST00000541410 RASL11BQ9BPW5 248 aa11.46□□□□□ -0.58
CLIP1-216ENST00000541410 IGHV4-38-2P0DP08 117 aa11.45□□□□□ -0.58
CLIP1-216ENST00000541410 SNRPEP62304 92 aaKnown RBP11.45□□□□□ -0.58
CLIP1-216ENST00000541410 LINC00479Q96M42 142 aa11.45□□□□□ -0.58
CLIP1-216ENST00000541410 FANCD2OSQ96PS1 177 aa11.45□□□□□ -0.58
CLIP1-216ENST00000541410 OR51M1Q9H341 326 aa11.45□□□□□ -0.58
CLIP1-216ENST00000541410 A0A0U1RQK1 487 aa11.45□□□□□ -0.58
CLIP1-216ENST00000541410 CXorf65A6NEN9 183 aa11.45□□□□□ -0.58
CLIP1-216ENST00000541410 IGKV1-17P01599 117 aa11.45□□□□□ -0.58
CLIP1-216ENST00000541410 EGR2P11161 476 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms