RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 C8orf88P0DMB2 117 aa10.12□□□□□ -0.79
RNF4-222ENST00000541204 PPOXP50336 477 aa10.12□□□□□ -0.79
RNF4-222ENST00000541204 RPL19P84098 196 aaKnown RBP10.12□□□□□ -0.79
RNF4-222ENST00000541204 OR10J3Q5JRS4 329 aa10.12□□□□□ -0.79
RNF4-222ENST00000541204 FAM168AQ92567 244 aa10.12□□□□□ -0.79
RNF4-222ENST00000541204 VKORC1Q9BQB6 163 aa10.12□□□□□ -0.79
RNF4-222ENST00000541204 GAL3ST2Q9H3Q3 398 aa10.12□□□□□ -0.79
RNF4-222ENST00000541204 NGBQ9NPG2 151 aa10.12□□□□□ -0.79
RNF4-222ENST00000541204 A0A1W2PRE2 83 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 BMPR1BO00238 502 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 CCL21O00585 134 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 AMY1AP04745 511 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 SSBP2P81877 361 aaPredicted RBP10.11□□□□□ -0.79
RNF4-222ENST00000541204 CD69Q07108 199 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 CDSNQ15517 529 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 KCNS1Q96KK3 526 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 SSBP3Q9BWW4 388 aaPredicted RBP10.11□□□□□ -0.79
RNF4-222ENST00000541204 SLC25A2Q9BXI2 301 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 CDC42EP3Q9UKI2 254 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 SMIM27A0A1W2PRY6 76 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 E7EUB6 86 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 UBE2L3P68036 154 aaKnown RBP10.11□□□□□ -0.79
RNF4-222ENST00000541204 NHLH1Q02575 133 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 LRRC10Q5BKY1 277 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 OR1L8Q8NGR8 309 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 OR10X1Q8NGY0 326 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 TMEM208Q9BTX3 173 aa10.11□□□□□ -0.79
RNF4-222ENST00000541204 RALYQ9UKM9 306 aaKnown RBP10.11□□□□□ -0.79
RNF4-222ENST00000541204 CD3EP07766 207 aa10.1□□□□□ -0.79
RNF4-222ENST00000541204 CHRNB4P30926 498 aa10.1□□□□□ -0.79
RNF4-222ENST00000541204 FAM19A2Q8N3H0 131 aa10.1□□□□□ -0.79
RNF4-222ENST00000541204 OR5B3Q8NH48 314 aa10.1□□□□□ -0.79
RNF4-222ENST00000541204 FAM167A-AS1Q96KT0 104 aa10.1□□□□□ -0.79
RNF4-222ENST00000541204 C19orf24Q9BVV8 132 aa10.1□□□□□ -0.79
RNF4-222ENST00000541204 BET1LQ9NYM9 111 aa10.1□□□□□ -0.79
RNF4-222ENST00000541204 IGHV3-48P01763 117 aa10.1□□□□□ -0.79
RNF4-222ENST00000541204 PYYP10082 97 aa10.1□□□□□ -0.79
RNF4-222ENST00000541204 PNKDQ8N490 385 aa10.1□□□□□ -0.79
RNF4-222ENST00000541204 HARBI1Q96MB7 349 aa10.1□□□□□ -0.79
RNF4-222ENST00000541204 IGHV1-69-2A0A0G2JMI3 117 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 LY6HO94772 140 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 RNF2Q99496 336 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 COMMD5Q9GZQ3 224 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 IGHV3-72A0A0B4J1Y9 119 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 PSMB11A5LHX3 300 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 ZNF324O75467 553 aaPredicted RBP10.09□□□□□ -0.79
RNF4-222ENST00000541204 HLA-DQA1P01909 254 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 APCSP02743 223 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 SLAQ13239 276 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 MRPL52Q86TS9 123 aaKnown RBP10.09□□□□□ -0.79
RNF4-222ENST00000541204 OR4B1Q8NGF8 309 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 LINC00574Q9H8X3 128 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 DNAJC4Q9NNZ3 241 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 ASH1LQ9NR48 2969 aaKnown RBP10.09□□□□□ -0.79
RNF4-222ENST00000541204 TRAV34A0A0B4J273 112 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 USF1P22415 310 aaPredicted RBP10.09□□□□□ -0.79
RNF4-222ENST00000541204 APOBEC3AP31941 199 aaPredicted RBP10.09□□□□□ -0.79
RNF4-222ENST00000541204 COX19Q49B96 90 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 SPATA45Q537H7 98 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 TMEM68Q96MH6 324 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 LPAR2Q9HBW0 351 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 NDUFA4L2Q9NRX3 87 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 ZNF355PQ9NSJ1 428 aa10.09□□□□□ -0.79
RNF4-222ENST00000541204 IZUMO1RA6ND01 250 aa10.08□□□□□ -0.8
RNF4-222ENST00000541204 DLL1O00548 723 aa10.08□□□□□ -0.8
RNF4-222ENST00000541204 DLEU1O43261 78 aa10.08□□□□□ -0.8
RNF4-222ENST00000541204 NTF3P20783 257 aa10.08□□□□□ -0.8
RNF4-222ENST00000541204 LOXP28300 417 aaPredicted RBP10.08□□□□□ -0.8
RNF4-222ENST00000541204 MEF2CQ06413 473 aaPredicted RBP10.08□□□□□ -0.8
RNF4-222ENST00000541204 TSKUQ8WUA8 353 aa10.08□□□□□ -0.8
RNF4-222ENST00000541204 MRPL32Q9BYC8 188 aaKnown RBP10.08□□□□□ -0.8
RNF4-222ENST00000541204 ZNF331Q9NQX6 463 aaPredicted RBP10.08□□□□□ -0.8
RNF4-222ENST00000541204 AMMECR1Q9Y4X0 333 aaPredicted RBP10.08□□□□□ -0.8
RNF4-222ENST00000541204 SIAH2O43255 324 aa10.08□□□□□ -0.8
RNF4-222ENST00000541204 NPSP0C0P6 89 aa10.08□□□□□ -0.8
RNF4-222ENST00000541204 CTRLP40313 264 aa10.08□□□□□ -0.8
RNF4-222ENST00000541204 ATP5IP56385 69 aaPredicted RBP10.08□□□□□ -0.8
RNF4-222ENST00000541204 RPL8P62917 257 aaKnown RBP10.08□□□□□ -0.8
RNF4-222ENST00000541204 ERHP84090 104 aaKnown RBP10.08□□□□□ -0.8
RNF4-222ENST00000541204 SPTBN1Q01082 2364 aaKnown RBP10.08□□□□□ -0.8
RNF4-222ENST00000541204 ZNF833PQ6ZTB9 187 aa10.08□□□□□ -0.8
RNF4-222ENST00000541204 NIT1Q86X76 327 aa10.08□□□□□ -0.8
RNF4-222ENST00000541204 WNT10AQ9GZT5 417 aa10.08□□□□□ -0.8
RNF4-222ENST00000541204 SVEP1Q4LDE5 3571 aa10.07□□□□□ -0.8
RNF4-222ENST00000541204 COX7A2P2O60397 106 aa10.07□□□□□ -0.8
RNF4-222ENST00000541204 APOA2P02652 100 aa10.07□□□□□ -0.8
RNF4-222ENST00000541204 C3orf79P0CE67 100 aa10.07□□□□□ -0.8
RNF4-222ENST00000541204 TFPI2P48307 235 aa10.07□□□□□ -0.8
RNF4-222ENST00000541204 C10orf55Q5SWW7 151 aa10.07□□□□□ -0.8
RNF4-222ENST00000541204 OSR1Q8TAX0 266 aaPredicted RBP10.07□□□□□ -0.8
RNF4-222ENST00000541204 FNDC4Q9H6D8 234 aaPredicted RBP10.07□□□□□ -0.8
RNF4-222ENST00000541204 MALRD1Q5VYJ5 2156 aa10.07□□□□□ -0.8
RNF4-222ENST00000541204 H0YJW9 148 aa10.07□□□□□ -0.8
RNF4-222ENST00000541204 ENSAO43768 121 aaKnown RBP10.07□□□□□ -0.8
RNF4-222ENST00000541204 PRR27Q6MZM9 219 aa10.07□□□□□ -0.8
RNF4-222ENST00000541204 MUC15Q8N387 334 aa10.07□□□□□ -0.8
RNF4-222ENST00000541204 CACNG8Q8WXS5 425 aa10.07□□□□□ -0.8
RNF4-222ENST00000541204 NPIPB3Q92617 1050 aa10.07□□□□□ -0.8
RNF4-222ENST00000541204 PAXXQ9BUH6 204 aa10.07□□□□□ -0.8
RNF4-222ENST00000541204 NAV3Q8IVL0 2385 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms