RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 Q6ZNX1 250 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 TMEM144Q7Z5S9 345 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 S100A7AQ86SG5 101 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 OR11H7Q8NGC8 314 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 OR9G4Q8NGQ1 327 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 Q8WTZ3 238 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 DLX4Q92988 240 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 C11orf1Q9H5F2 150 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 A8MWP6 167 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 PRSS46E5RG02 174 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 PPP5D1E7EU14 171 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 K7EMT4 169 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 OR2C1O95371 312 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 METTL15P1P0C7V9 234 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 SLURP1P55000 103 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 RAB31Q13636 194 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 GAMTQ14353 236 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 TMEM252Q8N6L7 170 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 NPIPB3Q92617 1050 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 ACY3Q96HD9 319 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 DUX3Q96PT4 197 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 S4R3C0 116 aa13.43□□□□□ -0.26
CLSTN3-210ENST00000540931 ZFP92A6NM28 416 aa13.42□□□□□ -0.26
CLSTN3-210ENST00000540931 F8W735 103 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-210ENST00000540931 TRBV12-3P01733 135 aa13.42□□□□□ -0.26
CLSTN3-210ENST00000540931 CD5P06127 495 aa13.42□□□□□ -0.26
CLSTN3-210ENST00000540931 LYL1P12980 280 aa13.42□□□□□ -0.26
CLSTN3-210ENST00000540931 SYNJ2BPP57105 145 aa13.42□□□□□ -0.26
CLSTN3-210ENST00000540931 AKR1C1Q04828 323 aa13.42□□□□□ -0.26
CLSTN3-210ENST00000540931 HIST2H2BDQ6DRA6 164 aa13.42□□□□□ -0.26
CLSTN3-210ENST00000540931 C11orf87Q6NUJ2 197 aa13.42□□□□□ -0.26
CLSTN3-210ENST00000540931 LILRB2Q8N423 598 aa13.42□□□□□ -0.26
CLSTN3-210ENST00000540931 NARS2Q96I59 477 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-210ENST00000540931 TRGV9Q99603 122 aa13.42□□□□□ -0.26
CLSTN3-210ENST00000540931 DAZ1Q9NQZ3 744 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-210ENST00000540931 ZNF320A2RRD8 509 aa13.41□□□□□ -0.26
CLSTN3-210ENST00000540931 PMS2P5A8MQ11 134 aa13.41□□□□□ -0.26
CLSTN3-210ENST00000540931 IGLC1P0CG04 106 aa13.41□□□□□ -0.26
CLSTN3-210ENST00000540931 SELENOTP62341 195 aa13.41□□□□□ -0.26
CLSTN3-210ENST00000540931 TEPPQ6URK8 271 aa13.41□□□□□ -0.26
CLSTN3-210ENST00000540931 ACOT7LQ6ZUV0 252 aa13.41□□□□□ -0.26
CLSTN3-210ENST00000540931 TMEM190Q8WZ59 177 aa13.41□□□□□ -0.26
CLSTN3-210ENST00000540931 CHRDL1Q9BU40 450 aa13.41□□□□□ -0.26
CLSTN3-210ENST00000540931 TECRQ9NZ01 308 aaKnown RBP13.41□□□□□ -0.26
CLSTN3-210ENST00000540931 MRPL27Q9P0M9 148 aaKnown RBP13.41□□□□□ -0.26
CLSTN3-210ENST00000540931 RNF24Q9Y225 148 aa13.41□□□□□ -0.26
CLSTN3-210ENST00000540931 FAM24AA6NFZ4 105 aa13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 SEC14L6B5MCN3 397 aa13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 MPDU1O75352 247 aa13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 TOMM40O96008 361 aa13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 RD3LP0DJH9 198 aa13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 ADMP35318 185 aa13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 SLC38A11Q08AI6 406 aa13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 THAP8Q8NA92 274 aa13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 INO80EQ8NBZ0 244 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 OR2K2Q8NGT1 345 aa13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 OR2T35Q8NGX2 323 aa13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 TMEM231Q9H6L2 316 aa13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 ZC4H2Q9NQZ6 224 aa13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 UQCC1Q9NVA1 299 aa13.4□□□□□ -0.26
CLSTN3-210ENST00000540931 A0A1W2PS18 150 aa13.39□□□□□ -0.27
CLSTN3-210ENST00000540931 SMCO3A2RU48 225 aa13.39□□□□□ -0.27
CLSTN3-210ENST00000540931 DFFBO76075 338 aa13.39□□□□□ -0.27
CLSTN3-210ENST00000540931 YIF1AO95070 293 aa13.39□□□□□ -0.27
CLSTN3-210ENST00000540931 IGHV3-48P01763 117 aa13.39□□□□□ -0.27
CLSTN3-210ENST00000540931 MLANAQ16655 118 aa13.39□□□□□ -0.27
CLSTN3-210ENST00000540931 OR51G1Q8NGK1 321 aa13.39□□□□□ -0.27
CLSTN3-210ENST00000540931 RNF126Q9BV68 326 aa13.39□□□□□ -0.27
CLSTN3-210ENST00000540931 TMEM147Q9BVK8 224 aa13.39□□□□□ -0.27
CLSTN3-210ENST00000540931 OR5AC2Q9NZP5 309 aa13.39□□□□□ -0.27
CLSTN3-210ENST00000540931 MBD2Q9UBB5 411 aa13.39□□□□□ -0.27
CLSTN3-210ENST00000540931 VWFP04275 2813 aa13.39□□□□□ -0.27
CLSTN3-210ENST00000540931 WNK1Q9H4A3 2382 aa13.38□□□□□ -0.27
CLSTN3-210ENST00000540931 SAP30O75446 220 aa13.38□□□□□ -0.27
CLSTN3-210ENST00000540931 CST7O76096 145 aa13.38□□□□□ -0.27
CLSTN3-210ENST00000540931 IGKV1-17P01599 117 aa13.38□□□□□ -0.27
CLSTN3-210ENST00000540931 RPL12P30050 165 aaKnown RBP13.38□□□□□ -0.27
CLSTN3-210ENST00000540931 EWSR1Q01844 656 aaKnown RBP eCLIP13.38□□□□□ -0.27
CLSTN3-210ENST00000540931 PXDC1Q5TGL8 231 aa13.38□□□□□ -0.27
CLSTN3-210ENST00000540931 BPIFCQ8NFQ6 507 aa13.38□□□□□ -0.27
CLSTN3-210ENST00000540931 CHAC2Q8WUX2 184 aa13.38□□□□□ -0.27
CLSTN3-210ENST00000540931 PUS1Q9Y606 427 aaKnown RBP eCLIP13.38□□□□□ -0.27
CLSTN3-210ENST00000540931 NOTCH1P46531 2555 aa13.37□□□□□ -0.27
CLSTN3-210ENST00000540931 TRAV14DV4A0A0A6YYC5 116 aa13.37□□□□□ -0.27
CLSTN3-210ENST00000540931 H0YIZ8 118 aa13.37□□□□□ -0.27
CLSTN3-210ENST00000540931 NPPCP23582 126 aa13.37□□□□□ -0.27
CLSTN3-210ENST00000540931 VWC2Q2TAL6 325 aa13.37□□□□□ -0.27
CLSTN3-210ENST00000540931 TMEM217Q8N7C4 229 aa13.37□□□□□ -0.27
CLSTN3-210ENST00000540931 WDR89Q96FK6 387 aaPredicted RBP13.37□□□□□ -0.27
CLSTN3-210ENST00000540931 GRAMD2BQ96HH9 432 aa13.37□□□□□ -0.27
CLSTN3-210ENST00000540931 METTL26Q96S19 204 aa13.37□□□□□ -0.27
CLSTN3-210ENST00000540931 C20orf24Q9BUV8 137 aa13.37□□□□□ -0.27
CLSTN3-210ENST00000540931 KCNIP2Q9NS61 270 aa13.37□□□□□ -0.27
CLSTN3-210ENST00000540931 SLC45A2Q9UMX9 530 aa13.37□□□□□ -0.27
CLSTN3-210ENST00000540931 IGSF23A1L1A6 192 aa13.36□□□□□ -0.27
CLSTN3-210ENST00000540931 C8orf88P0DMB2 117 aa13.36□□□□□ -0.27
CLSTN3-210ENST00000540931 TIGITQ495A1 244 aa13.36□□□□□ -0.27
CLSTN3-210ENST00000540931 ZNF546Q86UE3 836 aa13.36□□□□□ -0.27
CLSTN3-210ENST00000540931 DYNLRB2Q8TF09 96 aa13.36□□□□□ -0.27
CLSTN3-210ENST00000540931 MRPL36Q9P0J6 103 aaKnown RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms