RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 FOXH1O75593 365 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 NDUFA3O95167 84 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 CNIH1O95406 144 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 MT-ND6P03923 174 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 SOD3P08294 240 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 S100A7P31151 101 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 MMDQ15546 238 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 MRGPRG-AS1Q2M3A8 158 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 RPEL1Q2QD12 228 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 COA6Q5JTJ3 125 aaKnown RBP5.31□□□□□ -1.56
USP28-206ENST00000538224 HIST3H2BBQ8N257 126 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 NPBQ8NG41 125 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 OR5T1Q8NG75 326 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 SGMS2Q8NHU3 365 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 OCC1Q8TAD7 63 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 FAM122AQ96E09 287 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 ZNF503Q96F45 646 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 FAM167A-AS1Q96KT0 104 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 NEU1Q99519 415 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 ELOVL1Q9BW60 279 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 GPR61Q9BZJ8 451 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 OSTCQ9NRP0 149 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 CDC42EP3Q9UKI2 254 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 CHTOPQ9Y3Y2 248 aaKnown RBP5.31□□□□□ -1.56
USP28-206ENST00000538224 TBL2Q9Y4P3 447 aaKnown RBP5.31□□□□□ -1.56
USP28-206ENST00000538224 NAV3Q8IVL0 2385 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 NBEAQ8NFP9 2946 aa5.31□□□□□ -1.56
USP28-206ENST00000538224 SPTBN2O15020 2390 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 KALRNO60229 2985 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 TRAV30A0A087WSZ9 112 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 A0A0U1RQK1 487 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 ZNF320A2RRD8 509 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 NPIPB5A8MRT5 1133 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 GGTLC3B5MD39 225 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 ISLRO14498 428 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 REG1AP05451 166 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 GATA2P23769 480 aaPredicted RBP5.3□□□□□ -1.56
USP28-206ENST00000538224 CRYBB3P26998 211 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 PDLIM4P50479 330 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 EFNA4P52798 201 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 LGALS4P56470 323 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 ERVFC1-1P60608 527 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 ARF6P62330 175 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 ZNF90Q03938 601 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 HCP5Q6MZN7 132 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 WDR73Q6P4I2 378 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 LINC00305Q7Z4B0 112 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 CFHR4Q92496 578 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 RASL11BQ9BPW5 248 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 FBXL15Q9H469 300 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 C1RLQ9NZP8 487 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 HIGD1AQ9Y241 93 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 TRAPPC1Q9Y5R8 145 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 SPTA1P02549 2419 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 ROS1P08922 2347 aa5.3□□□□□ -1.56
USP28-206ENST00000538224 LAMA5O15230 3695 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 XKRY2A2RUG3 117 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 PRSS47A8MTI9 375 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 I3L2K1 104 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 K7EN84 100 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 PEX7O00628 323 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 GCGP01275 180 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 HIST1H1BP16401 226 aaKnown RBP5.29□□□□□ -1.56
USP28-206ENST00000538224 CNTFRP26992 372 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 YPEL3P61236 119 aaPredicted RBP5.29□□□□□ -1.56
USP28-206ENST00000538224 RPL15P61313 204 aaKnown RBP5.29□□□□□ -1.56
USP28-206ENST00000538224 UBE2G1P62253 170 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 SUMO1P63165 101 aaKnown RBP5.29□□□□□ -1.56
USP28-206ENST00000538224 DEFA6Q01524 100 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 CDSNQ15517 529 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 MLANAQ16655 118 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 C5orf64Q2M2E5 130 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 SAPCD1Q5SSQ6 148 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 RASL11AQ6T310 242 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 PATE2Q6UY27 113 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 FAM231DQ6ZW35 169 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 VMO1Q7Z5L0 202 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 ZNF329Q86UD4 541 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 C5orf17Q8NAS9 161 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 OR1B1Q8NGR6 318 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 ITLN2Q8WWU7 325 aaPredicted RBP5.29□□□□□ -1.56
USP28-206ENST00000538224 IGFBPL1Q8WX77 278 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 TMEM18Q96B42 140 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 FXYD5Q96DB9 178 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 FMC1Q96HJ9 113 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 RITA1Q96K30 269 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 IGF2BP2-AS1Q96M15 143 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 ZNF48Q96MX3 618 aaPredicted RBP5.29□□□□□ -1.56
USP28-206ENST00000538224 UBTD1Q9HAC8 227 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 NIT2Q9NQR4 276 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 THYN1Q9P016 225 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 TMEM14CQ9P0S9 112 aa5.29□□□□□ -1.56
USP28-206ENST00000538224 IGHV2-70DA0A0C4DH43 119 aa5.28□□□□□ -1.56
USP28-206ENST00000538224 PGPEP1LA6NFU8 196 aa5.28□□□□□ -1.56
USP28-206ENST00000538224 TOMM40O96008 361 aa5.28□□□□□ -1.56
USP28-206ENST00000538224 IGLC1P0CG04 106 aa5.28□□□□□ -1.56
USP28-206ENST00000538224 HIST1H1EP10412 219 aaKnown RBP5.28□□□□□ -1.56
USP28-206ENST00000538224 HOXB4P17483 251 aaPredicted RBP5.28□□□□□ -1.56
USP28-206ENST00000538224 ORM2P19652 201 aa5.28□□□□□ -1.56
USP28-206ENST00000538224 BRS3P32247 399 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms