RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 RABL2BQ9UNT1 228 aa10.18□□□□□ -0.78
SYNE1-235ENST00000537033 DEFB4AO15263 64 aa10.17□□□□□ -0.78
SYNE1-235ENST00000537033 IGKV1-17P01599 117 aa10.17□□□□□ -0.78
SYNE1-235ENST00000537033 HNRNPCP07910 306 aaKnown RBP eCLIP10.17□□□□□ -0.78
SYNE1-235ENST00000537033 ZNF688P0C7X2 276 aa10.17□□□□□ -0.78
SYNE1-235ENST00000537033 OR10J1P30954 320 aa10.17□□□□□ -0.78
SYNE1-235ENST00000537033 AP2S1P53680 142 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-235ENST00000537033 MLANAQ16655 118 aa10.17□□□□□ -0.78
SYNE1-235ENST00000537033 C2orf83Q53S99 150 aa10.17□□□□□ -0.78
SYNE1-235ENST00000537033 TRPT1Q86TN4 253 aaKnown RBP10.17□□□□□ -0.78
SYNE1-235ENST00000537033 SELENOHQ8IZQ5 122 aaKnown RBP10.17□□□□□ -0.78
SYNE1-235ENST00000537033 LHFPL5Q8TAF8 219 aa10.17□□□□□ -0.78
SYNE1-235ENST00000537033 C2CD4CQ8TF44 421 aa10.17□□□□□ -0.78
SYNE1-235ENST00000537033 RTBDNQ9BSG5 229 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-235ENST00000537033 CRYM-AS1A6NIL9 109 aa10.16□□□□□ -0.78
SYNE1-235ENST00000537033 CTDSP2O14595 271 aa10.16□□□□□ -0.78
SYNE1-235ENST00000537033 IGLC1P0CG04 106 aa10.16□□□□□ -0.78
SYNE1-235ENST00000537033 TCTAP57738 103 aa10.16□□□□□ -0.78
SYNE1-235ENST00000537033 YPEL3P61236 119 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-235ENST00000537033 DHRS2Q13268 280 aa10.16□□□□□ -0.78
SYNE1-235ENST00000537033 PRSS54Q6PEW0 395 aa10.16□□□□□ -0.78
SYNE1-235ENST00000537033 RPP25LQ8N5L8 163 aaKnown RBP10.16□□□□□ -0.78
SYNE1-235ENST00000537033 OR4C16Q8NGL9 310 aa10.16□□□□□ -0.78
SYNE1-235ENST00000537033 DCANP1Q8TF63 244 aa10.16□□□□□ -0.78
SYNE1-235ENST00000537033 DIRAS2Q96HU8 199 aa10.16□□□□□ -0.78
SYNE1-235ENST00000537033 KCNIP3Q9Y2W7 256 aa10.16□□□□□ -0.78
SYNE1-235ENST00000537033 BIRC6Q9NR09 4857 aa10.16□□□□□ -0.78
SYNE1-235ENST00000537033 PLECQ15149 4684 aaKnown RBP10.15□□□□□ -0.78
SYNE1-235ENST00000537033 KNCNA6PVL3 124 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 C11orf94C9JXX5 98 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 CTDSPLO15194 276 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 GSTZ1O43708 216 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-235ENST00000537033 IL4P05112 153 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 SULT1A3P0DMM9 295 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 SULT1A4P0DMN0 295 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 MIFP14174 115 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 NPY1RP25929 384 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 ACTL10Q5JWF8 245 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 CLVS1Q8IUQ0 354 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-235ENST00000537033 IL22RA2Q969J5 263 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 GPR146Q96CH1 333 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 ACY3Q96HD9 319 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 SCGB3A2Q96PL1 93 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 HRH4Q9H3N8 390 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 SCP2D1Q9UJQ7 156 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 GPR132Q9UNW8 380 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 TMEM56-RWDD3S4R434 201 aa10.15□□□□□ -0.78
SYNE1-235ENST00000537033 DEDDO75618 318 aa10.14□□□□□ -0.79
SYNE1-235ENST00000537033 NXPH3O95157 252 aa10.14□□□□□ -0.79
SYNE1-235ENST00000537033 IFNA10P01566 189 aa10.14□□□□□ -0.79
SYNE1-235ENST00000537033 SNRPD3P62318 126 aaKnown RBP10.14□□□□□ -0.79
SYNE1-235ENST00000537033 SPCS2Q15005 226 aa10.14□□□□□ -0.79
SYNE1-235ENST00000537033 PSMG4Q5JS54 123 aa10.14□□□□□ -0.79
SYNE1-235ENST00000537033 C16orf54Q6UWD8 224 aa10.14□□□□□ -0.79
SYNE1-235ENST00000537033 Q8NAQ8 132 aa10.14□□□□□ -0.79
SYNE1-235ENST00000537033 OR51S1Q8NGJ8 323 aa10.14□□□□□ -0.79
SYNE1-235ENST00000537033 RAB2BQ8WUD1 216 aa10.14□□□□□ -0.79
SYNE1-235ENST00000537033 GLMPQ8WWB7 406 aa10.14□□□□□ -0.79
SYNE1-235ENST00000537033 CCDC59Q9P031 241 aaKnown RBP10.14□□□□□ -0.79
SYNE1-235ENST00000537033 U3KQE9 123 aa10.14□□□□□ -0.79
SYNE1-235ENST00000537033 IGHV4-28A0A0C4DH34 117 aa10.13□□□□□ -0.79
SYNE1-235ENST00000537033 NOL3O60936 208 aaKnown RBP10.13□□□□□ -0.79
SYNE1-235ENST00000537033 RD3LP0DJH9 198 aa10.13□□□□□ -0.79
SYNE1-235ENST00000537033 C4BPBP20851 252 aa10.13□□□□□ -0.79
SYNE1-235ENST00000537033 NUP62P37198 522 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-235ENST00000537033 ALDH3B2P48448 385 aa10.13□□□□□ -0.79
SYNE1-235ENST00000537033 CCR6P51684 374 aa10.13□□□□□ -0.79
SYNE1-235ENST00000537033 NPIPB3Q92617 1050 aa10.13□□□□□ -0.79
SYNE1-235ENST00000537033 C1QTNF4Q9BXJ3 329 aa10.13□□□□□ -0.79
SYNE1-235ENST00000537033 MCUBQ9NWR8 336 aa10.13□□□□□ -0.79
SYNE1-235ENST00000537033 RSL24D1Q9UHA3 163 aaKnown RBP10.13□□□□□ -0.79
SYNE1-235ENST00000537033 PFDN2Q9UHV9 154 aa10.13□□□□□ -0.79
SYNE1-235ENST00000537033 TBC1D24Q9ULP9 559 aa10.13□□□□□ -0.79
SYNE1-235ENST00000537033 AGRNO00468 2067 aa10.13□□□□□ -0.79
SYNE1-235ENST00000537033 PIGBOS1A0A0B4J2F0 54 aa10.12□□□□□ -0.79
SYNE1-235ENST00000537033 ZNF705EA8MWA4 302 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-235ENST00000537033 IGLL5B9A064 214 aa10.12□□□□□ -0.79
SYNE1-235ENST00000537033 TOMM40O96008 361 aa10.12□□□□□ -0.79
SYNE1-235ENST00000537033 GIG44P09565 113 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-235ENST00000537033 ANXA3P12429 323 aa10.12□□□□□ -0.79
SYNE1-235ENST00000537033 NUTF2P61970 127 aaKnown RBP10.12□□□□□ -0.79
SYNE1-235ENST00000537033 SRPXP78539 464 aa10.12□□□□□ -0.79
SYNE1-235ENST00000537033 SMCO1Q147U7 214 aa10.12□□□□□ -0.79
SYNE1-235ENST00000537033 USF2Q15853 346 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-235ENST00000537033 NMSQ5H8A3 153 aa10.12□□□□□ -0.79
SYNE1-235ENST00000537033 SIGLEC15Q6ZMC9 328 aa10.12□□□□□ -0.79
SYNE1-235ENST00000537033 BCL7BQ9BQE9 202 aa10.12□□□□□ -0.79
SYNE1-235ENST00000537033 NRN1Q9NPD7 142 aa10.12□□□□□ -0.79
SYNE1-235ENST00000537033 U3KQ87 197 aa10.12□□□□□ -0.79
SYNE1-235ENST00000537033 A0A0B4J2A0 478 aa10.11□□□□□ -0.79
SYNE1-235ENST00000537033 ANKRD20A5PA0PJZ0 165 aa10.11□□□□□ -0.79
SYNE1-235ENST00000537033 FAM90A26D6RGX4 464 aa10.11□□□□□ -0.79
SYNE1-235ENST00000537033 AKR1C4P17516 323 aa10.11□□□□□ -0.79
SYNE1-235ENST00000537033 HLA-DMBP28068 263 aa10.11□□□□□ -0.79
SYNE1-235ENST00000537033 LGI3Q8N145 548 aa10.11□□□□□ -0.79
SYNE1-235ENST00000537033 DTD1Q8TEA8 209 aa10.11□□□□□ -0.79
SYNE1-235ENST00000537033 TMEM170AQ8WVE7 144 aa10.11□□□□□ -0.79
SYNE1-235ENST00000537033 RAB40CQ96S21 281 aa10.11□□□□□ -0.79
SYNE1-235ENST00000537033 SEPSECSQ9HD40 501 aaKnown RBP10.11□□□□□ -0.79
SYNE1-235ENST00000537033 CLEC5AQ9NY25 188 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms