RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 FAM27E3Q08E93 113 aa11.44□□□□□ -0.58
LIG1-203ENST00000536218 LTC4SQ16873 150 aa11.44□□□□□ -0.58
LIG1-203ENST00000536218 MSMPQ1L6U9 139 aa11.44□□□□□ -0.58
LIG1-203ENST00000536218 TMEM97Q5BJF2 176 aa11.44□□□□□ -0.58
LIG1-203ENST00000536218 IGFL3Q6UXB1 125 aa11.44□□□□□ -0.58
LIG1-203ENST00000536218 C1orf162Q8NEQ5 155 aaPredicted RBP11.44□□□□□ -0.58
LIG1-203ENST00000536218 MBD3L2Q8NHZ7 208 aaPredicted RBP11.44□□□□□ -0.58
LIG1-203ENST00000536218 RFESDQ8TAC1 157 aa11.44□□□□□ -0.58
LIG1-203ENST00000536218 PLPPR2Q96GM1 343 aa11.44□□□□□ -0.58
LIG1-203ENST00000536218 NPFFR1Q9GZQ6 430 aa11.44□□□□□ -0.58
LIG1-203ENST00000536218 CXXC4Q9H2H0 198 aa11.44□□□□□ -0.58
LIG1-203ENST00000536218 LEPROTL1O95214 131 aa11.44□□□□□ -0.58
LIG1-203ENST00000536218 ZNF497Q6ZNH5 498 aa11.44□□□□□ -0.58
LIG1-203ENST00000536218 SCRT2Q9NQ03 307 aa11.44□□□□□ -0.58
LIG1-203ENST00000536218 SMPXQ9UHP9 88 aa11.44□□□□□ -0.58
LIG1-203ENST00000536218 TSSC4Q9Y5U2 329 aaPredicted RBP11.44□□□□□ -0.58
LIG1-203ENST00000536218 TRGV10A0A0A0MS01 117 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 A0A0G2JLM5 398 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 C9orf118A6NHY6 69 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 C9JCJ5 164 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 CD24P25063 80 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 HSD52Q0P140 79 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 ZNF146Q15072 292 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 SRSF7Q16629 238 aaKnown RBP eCLIP11.43□□□□□ -0.58
LIG1-203ENST00000536218 FAM168AQ92567 244 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 RAB1CQ92928 201 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 SLC25A15Q9Y619 301 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 TLN1Q9Y490 2541 aaKnown RBP11.43□□□□□ -0.58
LIG1-203ENST00000536218 EDDM3AQ14507 147 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 DRAM1Q8N682 238 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 WDR83OSQ9Y284 106 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 PKDREJQ9NTG1 2253 aa11.43□□□□□ -0.58
LIG1-203ENST00000536218 OR10J4P0C629 311 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 VWC2Q2TAL6 325 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 PET117Q6UWS5 81 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 C22orf34Q6ZV56 151 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 Q8N7P7 452 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 LRRC29Q8WV35 223 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 ZNF48Q96MX3 618 aaPredicted RBP11.42□□□□□ -0.58
LIG1-203ENST00000536218 ADGRG4Q8IZF6 3080 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 TPRP12270 2363 aaKnown RBP11.42□□□□□ -0.58
LIG1-203ENST00000536218 IGHV3-43A0A0B4J1X8 118 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 ISLRO14498 428 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 SPRY3O43610 288 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 IGHV3-43DP0DP04 118 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 DCTN5Q9BTE1 182 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 SMG1Q96Q15 3661 aaKnown RBP11.42□□□□□ -0.58
LIG1-203ENST00000536218 IGLV1-44P01699 117 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 HBZP02008 142 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 SPRNQ5BIV9 151 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 ZNF355PQ9NSJ1 428 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 KCNIP1Q9NZI2 227 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 USF3Q68DE3 2245 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 IGF2RP11717 2491 aa11.42□□□□□ -0.58
LIG1-203ENST00000536218 IGHV3OR15-7A0A075B7D8 119 aa11.41□□□□□ -0.58
LIG1-203ENST00000536218 TRBV6-6A0A0A6YYG2 114 aa11.41□□□□□ -0.58
LIG1-203ENST00000536218 IZUMO1RA6ND01 250 aa11.41□□□□□ -0.58
LIG1-203ENST00000536218 DEFB108AA8MXU0 73 aa11.41□□□□□ -0.58
LIG1-203ENST00000536218 GDF5OSQ5U4N7 250 aa11.41□□□□□ -0.58
LIG1-203ENST00000536218 ACP7Q6ZNF0 438 aa11.41□□□□□ -0.58
LIG1-203ENST00000536218 OSTCQ9NRP0 149 aa11.41□□□□□ -0.58
LIG1-203ENST00000536218 POLEQ07864 2286 aa11.41□□□□□ -0.58
LIG1-203ENST00000536218 SEC11AP67812 179 aa11.41□□□□□ -0.58
LIG1-203ENST00000536218 TRAT1Q6PIZ9 186 aa11.41□□□□□ -0.58
LIG1-203ENST00000536218 H2BFWTQ7Z2G1 175 aa11.41□□□□□ -0.58
LIG1-203ENST00000536218 PTPRQQ9UMZ3 2332 aa11.41□□□□□ -0.58
LIG1-203ENST00000536218 A6NDN8 102 aa11.4□□□□□ -0.58
LIG1-203ENST00000536218 K7EQM0 130 aa11.4□□□□□ -0.58
LIG1-203ENST00000536218 KIR3DS1Q14943 382 aa11.4□□□□□ -0.58
LIG1-203ENST00000536218 PSG5Q15238 335 aa11.4□□□□□ -0.58
LIG1-203ENST00000536218 FAM201AQ5SY85 155 aa11.4□□□□□ -0.58
LIG1-203ENST00000536218 TMEM116Q8NCL8 245 aa11.4□□□□□ -0.58
LIG1-203ENST00000536218 SCNM1Q9BWG6 230 aa11.4□□□□□ -0.58
LIG1-203ENST00000536218 C12orf77C9JDV5 145 aa11.4□□□□□ -0.58
LIG1-203ENST00000536218 IGHV3-13P01766 116 aa11.4□□□□□ -0.58
LIG1-203ENST00000536218 IGHV3-7P01780 117 aa11.4□□□□□ -0.58
LIG1-203ENST00000536218 SCGB1A1P11684 91 aa11.4□□□□□ -0.58
LIG1-203ENST00000536218 TMEM30CPA0ZSE6 113 aa11.4□□□□□ -0.59
LIG1-203ENST00000536218 GAGE12HA6NDE8 117 aa11.4□□□□□ -0.59
LIG1-203ENST00000536218 ADH4P08319 380 aa11.4□□□□□ -0.59
LIG1-203ENST00000536218 MGST2Q99735 147 aa11.4□□□□□ -0.59
LIG1-203ENST00000536218 MS4A5Q9H3V2 200 aa11.4□□□□□ -0.59
LIG1-203ENST00000536218 C15orf62A8K5M9 175 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 LINC00205P59089 165 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 TMEM249Q2WGJ8 235 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 TREML4Q6UXN2 200 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 OR52E5Q8NH55 327 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 VSTM2AQ8TAG5 236 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 GALMQ96C23 342 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 COQ2Q96H96 371 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 ZNF835Q9Y2P0 537 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 LY96Q9Y6Y9 160 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 IGHV1-24A0A0C4DH33 117 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 SMIM27A0A1W2PRY6 76 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 F2RL2O00254 374 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 RPL30P62888 115 aaKnown RBP11.39□□□□□ -0.59
LIG1-203ENST00000536218 C2orf91Q6ZV80 131 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 MOB1BQ7L9L4 216 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 MAP1LC3CQ9BXW4 147 aa11.39□□□□□ -0.59
LIG1-203ENST00000536218 PLEKHA3Q9HB20 300 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms