RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SLC24A4Q8NFF2 622 aa10.77□□□□□ -0.69
VPS28-215ENST00000531924 RNASEH2CQ8TDP1 164 aaKnown RBP10.77□□□□□ -0.69
VPS28-215ENST00000531924 PRRT1Q99946 306 aa10.77□□□□□ -0.69
VPS28-215ENST00000531924 RTBDNQ9BSG5 229 aaPredicted RBP10.77□□□□□ -0.69
VPS28-215ENST00000531924 KCNIP3Q9Y2W7 256 aa10.77□□□□□ -0.69
VPS28-215ENST00000531924 KNCNA6PVL3 124 aa10.76□□□□□ -0.69
VPS28-215ENST00000531924 IGKV1-17P01599 117 aa10.76□□□□□ -0.69
VPS28-215ENST00000531924 HNRNPCP07910 306 aaKnown RBP eCLIP10.76□□□□□ -0.69
VPS28-215ENST00000531924 BSXQ3C1V8 233 aa10.76□□□□□ -0.69
VPS28-215ENST00000531924 C2orf83Q53S99 150 aa10.76□□□□□ -0.69
VPS28-215ENST00000531924 ACTL10Q5JWF8 245 aa10.76□□□□□ -0.69
VPS28-215ENST00000531924 GLYATL2Q8WU03 294 aa10.76□□□□□ -0.69
VPS28-215ENST00000531924 GPR146Q96CH1 333 aa10.76□□□□□ -0.69
VPS28-215ENST00000531924 MIXL1Q9H2W2 232 aa10.76□□□□□ -0.69
VPS28-215ENST00000531924 RABL2AQ9UBK7 228 aaPredicted RBP10.76□□□□□ -0.69
VPS28-215ENST00000531924 RABL2BQ9UNT1 228 aa10.76□□□□□ -0.69
VPS28-215ENST00000531924 CTDSP2O14595 271 aa10.75□□□□□ -0.69
VPS28-215ENST00000531924 DEDDO75618 318 aa10.75□□□□□ -0.69
VPS28-215ENST00000531924 NXPH3O95157 252 aa10.75□□□□□ -0.69
VPS28-215ENST00000531924 SMIM18P0DKX4 95 aa10.75□□□□□ -0.69
VPS28-215ENST00000531924 TCTAP57738 103 aa10.75□□□□□ -0.69
VPS28-215ENST00000531924 YPEL3P61236 119 aaPredicted RBP10.75□□□□□ -0.69
VPS28-215ENST00000531924 AARDQ4LEZ3 155 aa10.75□□□□□ -0.69
VPS28-215ENST00000531924 PSMG4Q5JS54 123 aa10.75□□□□□ -0.69
VPS28-215ENST00000531924 PRSS54Q6PEW0 395 aa10.75□□□□□ -0.69
VPS28-215ENST00000531924 TRPT1Q86TN4 253 aaKnown RBP10.75□□□□□ -0.69
VPS28-215ENST00000531924 CLVS1Q8IUQ0 354 aaPredicted RBP10.75□□□□□ -0.69
VPS28-215ENST00000531924 LHFPL5Q8TAF8 219 aa10.75□□□□□ -0.69
VPS28-215ENST00000531924 SMIM4Q8WVI0 70 aa10.75□□□□□ -0.69
VPS28-215ENST00000531924 ACY3Q96HD9 319 aa10.75□□□□□ -0.69
VPS28-215ENST00000531924 DIRAS2Q96HU8 199 aa10.75□□□□□ -0.69
VPS28-215ENST00000531924 SCGB3A2Q96PL1 93 aa10.75□□□□□ -0.69
VPS28-215ENST00000531924 MRPS26Q9BYN8 205 aaKnown RBP10.75□□□□□ -0.69
VPS28-215ENST00000531924 CRYM-AS1A6NIL9 109 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 IGLL5B9A064 214 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 C11orf94C9JXX5 98 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 GSTZ1O43708 216 aaPredicted RBP10.74□□□□□ -0.69
VPS28-215ENST00000531924 IFNA10P01566 189 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 IL4P05112 153 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 IGLC1P0CG04 106 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 RD3LP0DJH9 198 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 SULT1A3P0DMM9 295 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 SULT1A4P0DMN0 295 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 MIFP14174 115 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 NPY1RP25929 384 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 SNRPD3P62318 126 aaKnown RBP10.74□□□□□ -0.69
VPS28-215ENST00000531924 OR4C16Q8NGL9 310 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 MCUBQ9NWR8 336 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 PFDN2Q9UHV9 154 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 SCP2D1Q9UJQ7 156 aa10.74□□□□□ -0.69
VPS28-215ENST00000531924 IGHV4-28A0A0C4DH34 117 aa10.73□□□□□ -0.69
VPS28-215ENST00000531924 NUTF2P61970 127 aaKnown RBP10.73□□□□□ -0.69
VPS28-215ENST00000531924 SPCS2Q15005 226 aa10.73□□□□□ -0.69
VPS28-215ENST00000531924 C16orf54Q6UWD8 224 aa10.73□□□□□ -0.69
VPS28-215ENST00000531924 OR51S1Q8NGJ8 323 aa10.73□□□□□ -0.69
VPS28-215ENST00000531924 DCANP1Q8TF63 244 aa10.73□□□□□ -0.69
VPS28-215ENST00000531924 NPIPB3Q92617 1050 aa10.73□□□□□ -0.69
VPS28-215ENST00000531924 HRH4Q9H3N8 390 aa10.73□□□□□ -0.69
VPS28-215ENST00000531924 TBC1D24Q9ULP9 559 aa10.73□□□□□ -0.69
VPS28-215ENST00000531924 GPR132Q9UNW8 380 aa10.73□□□□□ -0.69
VPS28-215ENST00000531924 TMEM56-RWDD3S4R434 201 aa10.73□□□□□ -0.69
VPS28-215ENST00000531924 CTDSPLO15194 276 aa10.72□□□□□ -0.69
VPS28-215ENST00000531924 NOL3O60936 208 aaKnown RBP10.72□□□□□ -0.69
VPS28-215ENST00000531924 ANXA3P12429 323 aa10.72□□□□□ -0.69
VPS28-215ENST00000531924 Q8NAQ8 132 aa10.72□□□□□ -0.69
VPS28-215ENST00000531924 IL22RA2Q969J5 263 aa10.72□□□□□ -0.69
VPS28-215ENST00000531924 RAB40CQ96S21 281 aa10.72□□□□□ -0.69
VPS28-215ENST00000531924 C1QTNF4Q9BXJ3 329 aa10.72□□□□□ -0.69
VPS28-215ENST00000531924 CLEC5AQ9NY25 188 aa10.72□□□□□ -0.69
VPS28-215ENST00000531924 RSL24D1Q9UHA3 163 aaKnown RBP10.72□□□□□ -0.69
VPS28-215ENST00000531924 U3KQ87 197 aa10.72□□□□□ -0.69
VPS28-215ENST00000531924 U3KQE9 123 aa10.72□□□□□ -0.69
VPS28-215ENST00000531924 TOMM40O96008 361 aa10.71□□□□□ -0.69
VPS28-215ENST00000531924 RBMY1A1P0DJD3 496 aaKnown RBP10.71□□□□□ -0.69
VPS28-215ENST00000531924 RBMY1CP0DJD4 496 aa10.71□□□□□ -0.69
VPS28-215ENST00000531924 AKR1C4P17516 323 aa10.71□□□□□ -0.69
VPS28-215ENST00000531924 C4BPBP20851 252 aa10.71□□□□□ -0.69
VPS28-215ENST00000531924 HLA-DMBP28068 263 aa10.71□□□□□ -0.69
VPS28-215ENST00000531924 NUP62P37198 522 aaPredicted RBP10.71□□□□□ -0.69
VPS28-215ENST00000531924 CCR6P51684 374 aa10.71□□□□□ -0.69
VPS28-215ENST00000531924 RBMY1FQ15415 496 aaKnown RBP10.71□□□□□ -0.69
VPS28-215ENST00000531924 SIGLEC15Q6ZMC9 328 aa10.71□□□□□ -0.69
VPS28-215ENST00000531924 LGI3Q8N145 548 aa10.71□□□□□ -0.69
VPS28-215ENST00000531924 RAB2BQ8WUD1 216 aa10.71□□□□□ -0.69
VPS28-215ENST00000531924 GLMPQ8WWB7 406 aa10.71□□□□□ -0.69
VPS28-215ENST00000531924 PBDC1Q9BVG4 233 aa10.71□□□□□ -0.69
VPS28-215ENST00000531924 NRN1Q9NPD7 142 aa10.71□□□□□ -0.69
VPS28-215ENST00000531924 PIGBOS1A0A0B4J2F0 54 aa10.7□□□□□ -0.7
VPS28-215ENST00000531924 FABP1P07148 127 aa10.7□□□□□ -0.7
VPS28-215ENST00000531924 GIG44P09565 113 aaPredicted RBP10.7□□□□□ -0.7
VPS28-215ENST00000531924 ALDH3B2P48448 385 aa10.7□□□□□ -0.7
VPS28-215ENST00000531924 SRPXP78539 464 aa10.7□□□□□ -0.7
VPS28-215ENST00000531924 KLF9Q13886 244 aaPredicted RBP10.7□□□□□ -0.7
VPS28-215ENST00000531924 SMCO1Q147U7 214 aa10.7□□□□□ -0.7
VPS28-215ENST00000531924 USF2Q15853 346 aaPredicted RBP10.7□□□□□ -0.7
VPS28-215ENST00000531924 NMSQ5H8A3 153 aa10.7□□□□□ -0.7
VPS28-215ENST00000531924 DTD1Q8TEA8 209 aa10.7□□□□□ -0.7
VPS28-215ENST00000531924 PRR13Q9NZ81 148 aa10.7□□□□□ -0.7
VPS28-215ENST00000531924 CCDC59Q9P031 241 aaKnown RBP10.7□□□□□ -0.7
VPS28-215ENST00000531924 TRAV10A0A0B4J240 114 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms