RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 STX5Q13190 355 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 SAPCD1Q5SSQ6 148 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 HCP5Q6MZN7 132 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 DEFB119Q8N690 84 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 GNPNAT1Q96EK6 184 aaPredicted RBP2.05□□□□□ -2.08
CD44-223ENST00000526553 CHMP6Q96FZ7 201 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 OR52B2Q96RD2 323 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 OR52E6Q96RD3 313 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 YIPF3Q9GZM5 350 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 FAM96AQ9H5X1 160 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 VPS29Q9UBQ0 182 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 ANAPC10Q9UM13 185 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 HSPE1-MOB4S4R3N1 261 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 TENM4Q6N022 2769 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 TSC2P49815 1807 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 PLXND1Q9Y4D7 1925 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 DSCAML1Q8TD84 2053 aa2.05□□□□□ -2.08
CD44-223ENST00000526553 UNC79Q9P2D8 2635 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 FBN1P35555 2871 aaKnown RBP2.04□□□□□ -2.08
CD44-223ENST00000526553 SMIM31A0A1B0GVY4 71 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 TMEM235A6NFC5 223 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 OR11H12B2RN74 326 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 FAM25AB3EWG3 89 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 FAM25CB3EWG5 89 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 FAM25GB3EWG6 89 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 C9JCJ5 164 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 MUC22E2RYF6 1773 aaPredicted RBP2.04□□□□□ -2.08
CD44-223ENST00000526553 H3BPC8 53 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 TRAPPC3O43617 180 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 IGHV1-69P01742 117 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 GZMBP10144 247 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 CPMP14384 443 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 CCR2P41597 374 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 RPL27AP46776 148 aaKnown RBP2.04□□□□□ -2.08
CD44-223ENST00000526553 REG1BP48304 166 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 ZNF140P52738 457 aaPredicted RBP2.04□□□□□ -2.08
CD44-223ENST00000526553 SPCS3P61009 180 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 PSG4Q00888 419 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 GNA12Q03113 381 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 KRTAP6-3Q3LI67 103 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 HIST2H3PS2Q5TEC6 136 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 MSRB3Q8IXL7 192 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 SLC22A24Q8N4F4 322 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 TSTD1Q8NFU3 115 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 OR11H2Q8NH07 326 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 GRPEL2Q8TAA5 225 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 ZCCHC13Q8WW36 166 aaKnown RBP2.04□□□□□ -2.08
CD44-223ENST00000526553 AHCTF1Q8WYP5 2266 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 CREBBPQ92793 2442 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 SLC35B4Q969S0 331 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 C6orf62Q9GZU0 229 aaPredicted RBP2.04□□□□□ -2.08
CD44-223ENST00000526553 AICDAQ9GZX7 198 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 GPR84Q9NQS5 396 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 GID8Q9NWU2 228 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 CELSR3Q9NYQ7 3312 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 PSORS1C2Q9UIG4 136 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 PXMP4Q9Y6I8 212 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 FREM2Q5SZK8 3169 aa2.04□□□□□ -2.08
CD44-223ENST00000526553 PTPN13Q12923 2485 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 SPTAN1Q13813 2472 aaKnown RBP2.03□□□□□ -2.08
CD44-223ENST00000526553 NUMA1Q14980 2115 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 TEP1Q99973 2627 aaKnown RBP2.03□□□□□ -2.08
CD44-223ENST00000526553 IGHV3-15A0A0B4J1V0 119 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 A0A1W2PQL4 384 aaPredicted RBP2.03□□□□□ -2.08
CD44-223ENST00000526553 C19orf71A6NCJ1 209 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 CCDC160A6NGH7 325 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 TMEM114B3SHH9 223 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 KPNA3O00505 521 aaPredicted RBP2.03□□□□□ -2.08
CD44-223ENST00000526553 LYPLA2O95372 231 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 FAM107AO95990 144 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 SOD1P00441 154 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 NPYP01303 97 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 CD79AP11912 226 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 ALOX5APP20292 161 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 CCL1P22362 96 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 CD24P25063 80 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 HOXA6P31267 233 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 MAP2K4P45985 399 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 GABRA2P47869 451 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 GZMMP51124 257 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 RBM11P57052 281 aaKnown RBP2.03□□□□□ -2.08
CD44-223ENST00000526553 TAS2R30P59541 319 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 RPL26P61254 145 aaKnown RBP2.03□□□□□ -2.08
CD44-223ENST00000526553 CCL7P80098 99 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 S100A12P80511 92 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 SPCS2Q15005 226 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 FAM229BQ4G0N7 80 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 FAM201AQ5SY85 155 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.03□□□□□ -2.08
CD44-223ENST00000526553 GLT6D1Q7Z4J2 308 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 GPHB5Q86YW7 130 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 CTAGE3PQ8IX95 158 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 DAND5Q8N907 189 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 OR4C16Q8NGL9 310 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 RAB2BQ8WUD1 216 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 ROPN1LQ96C74 230 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 C16orf95Q9H693 158 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 TAAR3PQ9P1P4 343 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 ANGPT4Q9Y264 503 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 ZNF337Q9Y3M9 751 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms