RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 ANXA7P20073 488 aaKnown RBP10.36□□□□□ -0.75
CPSF1-201ENST00000526271 TMEM187Q14656 261 aa10.36□□□□□ -0.75
CPSF1-201ENST00000526271 SP6Q3SY56 376 aa10.36□□□□□ -0.75
CPSF1-201ENST00000526271 CADM3Q8N126 398 aa10.36□□□□□ -0.75
CPSF1-201ENST00000526271 TMEM116Q8NCL8 245 aa10.36□□□□□ -0.75
CPSF1-201ENST00000526271 ST8SIA2Q92186 375 aa10.36□□□□□ -0.75
CPSF1-201ENST00000526271 LSM10Q969L4 123 aaKnown RBP10.36□□□□□ -0.75
CPSF1-201ENST00000526271 MARVELD1Q9BSK0 173 aa10.36□□□□□ -0.75
CPSF1-201ENST00000526271 HINT2Q9BX68 163 aa10.36□□□□□ -0.75
CPSF1-201ENST00000526271 KRTAP4-5Q9BYR2 181 aa10.36□□□□□ -0.75
CPSF1-201ENST00000526271 TMEM222Q9H0R3 208 aa10.36□□□□□ -0.75
CPSF1-201ENST00000526271 TMEM14BQ9NUH8 114 aa10.36□□□□□ -0.75
CPSF1-201ENST00000526271 NUDT15Q9NV35 164 aa10.36□□□□□ -0.75
CPSF1-201ENST00000526271 OR51B2Q9Y5P1 312 aa10.36□□□□□ -0.75
CPSF1-201ENST00000526271 NUPL2O15504 423 aaKnown RBP10.35□□□□□ -0.75
CPSF1-201ENST00000526271 SFT2D2O95562 160 aa10.35□□□□□ -0.75
CPSF1-201ENST00000526271 KRASP01116 189 aa10.35□□□□□ -0.75
CPSF1-201ENST00000526271 OR4E1P0C645 316 aa10.35□□□□□ -0.75
CPSF1-201ENST00000526271 ERVK-16P61578 105 aa10.35□□□□□ -0.75
CPSF1-201ENST00000526271 PPP1R1AQ13522 171 aa10.35□□□□□ -0.75
CPSF1-201ENST00000526271 Q56UQ5 140 aa10.35□□□□□ -0.75
CPSF1-201ENST00000526271 LEMD1Q68G75 181 aa10.35□□□□□ -0.75
CPSF1-201ENST00000526271 THOC7Q6I9Y2 204 aaKnown RBP10.35□□□□□ -0.75
CPSF1-201ENST00000526271 TMEM56Q96MV1 263 aa10.35□□□□□ -0.75
CPSF1-201ENST00000526271 VSIRQ9H7M9 311 aa10.35□□□□□ -0.75
CPSF1-201ENST00000526271 ZFAND3Q9H8U3 227 aa10.35□□□□□ -0.75
CPSF1-201ENST00000526271 TMEM56-RWDD3S4R434 201 aa10.35□□□□□ -0.75
CPSF1-201ENST00000526271 LRP1BQ9NZR2 4599 aa10.34□□□□□ -0.75
CPSF1-201ENST00000526271 ELOA3CA0A087WX78 387 aaPredicted RBP10.34□□□□□ -0.75
CPSF1-201ENST00000526271 C9orf170A2RU37 121 aa10.34□□□□□ -0.75
CPSF1-201ENST00000526271 CA1P00915 261 aaPredicted RBP10.34□□□□□ -0.75
CPSF1-201ENST00000526271 RGS21Q2M5E4 152 aa10.34□□□□□ -0.75
CPSF1-201ENST00000526271 HSD17B13Q7Z5P4 300 aaPredicted RBP10.34□□□□□ -0.75
CPSF1-201ENST00000526271 SELENOHQ8IZQ5 122 aaKnown RBP10.34□□□□□ -0.75
CPSF1-201ENST00000526271 C2CD4CQ8TF44 421 aa10.34□□□□□ -0.75
CPSF1-201ENST00000526271 SEC22AQ96IW7 307 aa10.34□□□□□ -0.75
CPSF1-201ENST00000526271 MRPL36Q9P0J6 103 aaKnown RBP10.34□□□□□ -0.75
CPSF1-201ENST00000526271 X6R8D5 127 aa10.34□□□□□ -0.75
CPSF1-201ENST00000526271 IGHV3-66A0A0C4DH42 116 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 A0A1B0GU03 582 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 INMT-MINDY4F8WBC2 141 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 MT-CO2P00403 227 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 IL5P05113 134 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 ANXA3P12429 323 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 C4BPBP20851 252 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 DEFB131AP59861 70 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 OXA1LQ15070 435 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 TOMM20LQ6UXN7 152 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 TCF24Q7RTU0 167 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 LRTM2Q8N967 370 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 OR1P1Q8NH06 330 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 LHFPL5Q8TAF8 219 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 IL22RA2Q969J5 263 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 MS4A6AQ9H2W1 248 aa10.33□□□□□ -0.76
CPSF1-201ENST00000526271 IGHV4-28A0A0C4DH34 117 aa10.32□□□□□ -0.76
CPSF1-201ENST00000526271 C15orf61A6NNL5 157 aa10.32□□□□□ -0.76
CPSF1-201ENST00000526271 IGLL5B9A064 214 aa10.32□□□□□ -0.76
CPSF1-201ENST00000526271 RTL8CO15255 209 aa10.32□□□□□ -0.76
CPSF1-201ENST00000526271 DFFBO76075 338 aa10.32□□□□□ -0.76
CPSF1-201ENST00000526271 P0C879 139 aa10.32□□□□□ -0.76
CPSF1-201ENST00000526271 DHRS2Q13268 280 aa10.32□□□□□ -0.76
CPSF1-201ENST00000526271 IZUMO4Q1ZYL8 232 aa10.32□□□□□ -0.76
CPSF1-201ENST00000526271 C4orf46Q504U0 113 aa10.32□□□□□ -0.76
CPSF1-201ENST00000526271 Q6ZTC4 211 aa10.32□□□□□ -0.76
CPSF1-201ENST00000526271 RBPMSQ93062 196 aaKnown RBP10.32□□□□□ -0.76
CPSF1-201ENST00000526271 CELA1Q9UNI1 258 aa10.32□□□□□ -0.76
CPSF1-201ENST00000526271 TRAV14DV4A0A0A6YYC5 116 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 A0A0B4J2A0 478 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 SNAPC5O75971 98 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 ATG12O94817 140 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 IGKV1-5P01602 117 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 VAMP1P23763 118 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 HLA-DMBP28068 263 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 SRPXP78539 464 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 TRIM16LQ309B1 348 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 PVRIGQ6DKI7 326 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 TRPT1Q86TN4 253 aaKnown RBP10.31□□□□□ -0.76
CPSF1-201ENST00000526271 LGI3Q8N145 548 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 ZNF114Q8NC26 417 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 CSNK1G2-AS1Q8NCQ2 148 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 MITD1Q8WV92 249 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 MISP3Q96FF7 219 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 MFFQ9GZY8 342 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 PRR13Q9NZ81 148 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 SHPKQ9UHJ6 478 aa10.31□□□□□ -0.76
CPSF1-201ENST00000526271 PIGBOS1A0A0B4J2F0 54 aa10.3□□□□□ -0.76
CPSF1-201ENST00000526271 ZNF705EA8MWA4 302 aaPredicted RBP10.3□□□□□ -0.76
CPSF1-201ENST00000526271 PRAF2O60831 178 aa10.3□□□□□ -0.76
CPSF1-201ENST00000526271 YIF1AO95070 293 aa10.3□□□□□ -0.76
CPSF1-201ENST00000526271 SPINK9Q5DT21 86 aa10.3□□□□□ -0.76
CPSF1-201ENST00000526271 TMEM268Q5VZI3 342 aa10.3□□□□□ -0.76
CPSF1-201ENST00000526271 ZNF431Q8TF32 576 aaPredicted RBP10.3□□□□□ -0.76
CPSF1-201ENST00000526271 SEC22CQ9BRL7 303 aa10.3□□□□□ -0.76
CPSF1-201ENST00000526271 HRH4Q9H3N8 390 aa10.3□□□□□ -0.76
CPSF1-201ENST00000526271 PRNDQ9UKY0 176 aa10.3□□□□□ -0.76
CPSF1-201ENST00000526271 IGHV4-4A0A075B6R2 117 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 A0A0G2JRQ6 117 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 DUXBA0A1W2PPF3 345 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 KNCNA6PVL3 124 aa10.29□□□□□ -0.76
CPSF1-201ENST00000526271 SNRPGP15A8MWD9 76 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms