RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 SULT1A3P0DMM9 295 aa12.85□□□□□ -0.35
DDX41-217ENST00000515562 SULT1A4P0DMN0 295 aa12.85□□□□□ -0.35
DDX41-217ENST00000515562 P2RY1P47900 373 aa12.85□□□□□ -0.35
DDX41-217ENST00000515562 DEFB131AP59861 70 aa12.85□□□□□ -0.35
DDX41-217ENST00000515562 MLANAQ16655 118 aa12.85□□□□□ -0.35
DDX41-217ENST00000515562 TIGITQ495A1 244 aa12.85□□□□□ -0.35
DDX41-217ENST00000515562 ETFRF1Q6IPR1 90 aa12.85□□□□□ -0.35
DDX41-217ENST00000515562 PRSS54Q6PEW0 395 aa12.85□□□□□ -0.35
DDX41-217ENST00000515562 CEMP1Q6PRD7 247 aaPredicted RBP12.85□□□□□ -0.35
DDX41-217ENST00000515562 LINC00476Q8WZB0 136 aa12.85□□□□□ -0.35
DDX41-217ENST00000515562 PIGBOS1A0A0B4J2F0 54 aa12.84□□□□□ -0.35
DDX41-217ENST00000515562 FABP12A6NFH5 140 aa12.84□□□□□ -0.35
DDX41-217ENST00000515562 CA1P00915 261 aaPredicted RBP12.84□□□□□ -0.35
DDX41-217ENST00000515562 NPY1RP25929 384 aa12.84□□□□□ -0.35
DDX41-217ENST00000515562 EIF2B2P49770 351 aaKnown RBP12.84□□□□□ -0.35
DDX41-217ENST00000515562 RND2P52198 227 aa12.84□□□□□ -0.35
DDX41-217ENST00000515562 SRPXP78539 464 aa12.84□□□□□ -0.35
DDX41-217ENST00000515562 TMEM187Q14656 261 aa12.84□□□□□ -0.35
DDX41-217ENST00000515562 NMSQ5H8A3 153 aa12.84□□□□□ -0.35
DDX41-217ENST00000515562 LEMD1Q68G75 181 aa12.84□□□□□ -0.35
DDX41-217ENST00000515562 STXBP6Q8NFX7 210 aa12.84□□□□□ -0.35
DDX41-217ENST00000515562 MCFD2Q8NI22 146 aa12.84□□□□□ -0.35
DDX41-217ENST00000515562 RARRES2Q99969 163 aa12.84□□□□□ -0.35
DDX41-217ENST00000515562 KLK5Q9Y337 293 aaPredicted RBP12.84□□□□□ -0.35
DDX41-217ENST00000515562 PLECQ15149 4684 aaKnown RBP12.84□□□□□ -0.35
DDX41-217ENST00000515562 EPPK1P58107 5090 aaKnown RBP12.84□□□□□ -0.35
DDX41-217ENST00000515562 A0A0B4J2A0 478 aa12.83□□□□□ -0.36
DDX41-217ENST00000515562 ANXA3P12429 323 aa12.83□□□□□ -0.36
DDX41-217ENST00000515562 OR10J1P30954 320 aa12.83□□□□□ -0.36
DDX41-217ENST00000515562 TNFSF8P32971 234 aa12.83□□□□□ -0.36
DDX41-217ENST00000515562 FAUP35544 74 aaKnown RBP12.83□□□□□ -0.36
DDX41-217ENST00000515562 YPEL3P61236 119 aaPredicted RBP12.83□□□□□ -0.36
DDX41-217ENST00000515562 STHQ8IWL8 128 aa12.83□□□□□ -0.36
DDX41-217ENST00000515562 Q8WTZ3 238 aa12.83□□□□□ -0.36
DDX41-217ENST00000515562 SOSTQ9BQB4 213 aa12.83□□□□□ -0.36
DDX41-217ENST00000515562 C11orf68Q9H3H3 251 aaKnown RBP12.83□□□□□ -0.36
DDX41-217ENST00000515562 SHPKQ9UHJ6 478 aa12.83□□□□□ -0.36
DDX41-217ENST00000515562 HELTA6NFD8 242 aa12.82□□□□□ -0.36
DDX41-217ENST00000515562 K7EQG2 157 aa12.82□□□□□ -0.36
DDX41-217ENST00000515562 NXPH3O95157 252 aa12.82□□□□□ -0.36
DDX41-217ENST00000515562 AKR1C4P17516 323 aa12.82□□□□□ -0.36
DDX41-217ENST00000515562 CCR6P51684 374 aa12.82□□□□□ -0.36
DDX41-217ENST00000515562 SMCO1Q147U7 214 aa12.82□□□□□ -0.36
DDX41-217ENST00000515562 FAM24BQ8N5W8 94 aa12.82□□□□□ -0.36
DDX41-217ENST00000515562 TMEM170AQ8WVE7 144 aa12.82□□□□□ -0.36
DDX41-217ENST00000515562 HSPB7Q9UBY9 170 aa12.82□□□□□ -0.36
DDX41-217ENST00000515562 IFNA10P01566 189 aa12.81□□□□□ -0.36
DDX41-217ENST00000515562 HNRNPCP07910 306 aaKnown RBP eCLIP12.81□□□□□ -0.36
DDX41-217ENST00000515562 AP3S2P59780 193 aa12.81□□□□□ -0.36
DDX41-217ENST00000515562 SUPT4H1P63272 117 aaKnown RBP12.81□□□□□ -0.36
DDX41-217ENST00000515562 TMEM41BQ5BJD5 291 aa12.81□□□□□ -0.36
DDX41-217ENST00000515562 LGI3Q8N145 548 aa12.81□□□□□ -0.36
DDX41-217ENST00000515562 OR11H2Q8NH07 326 aa12.81□□□□□ -0.36
DDX41-217ENST00000515562 DTD1Q8TEA8 209 aa12.81□□□□□ -0.36
DDX41-217ENST00000515562 PRR13Q9NZ81 148 aa12.81□□□□□ -0.36
DDX41-217ENST00000515562 U3KQ87 197 aa12.81□□□□□ -0.36
DDX41-217ENST00000515562 AP2S1P53680 142 aaPredicted RBP12.8□□□□□ -0.36
DDX41-217ENST00000515562 RBMS2Q15434 407 aaKnown RBP12.8□□□□□ -0.36
DDX41-217ENST00000515562 DCANP1Q8TF63 244 aa12.8□□□□□ -0.36
DDX41-217ENST00000515562 ACY3Q96HD9 319 aa12.8□□□□□ -0.36
DDX41-217ENST00000515562 MFFQ9GZY8 342 aa12.8□□□□□ -0.36
DDX41-217ENST00000515562 U3KQE9 123 aa12.8□□□□□ -0.36
DDX41-217ENST00000515562 LY6G6CO95867 125 aa12.79□□□□□ -0.36
DDX41-217ENST00000515562 TOMM40O96008 361 aa12.79□□□□□ -0.36
DDX41-217ENST00000515562 IL4P05112 153 aa12.79□□□□□ -0.36
DDX41-217ENST00000515562 ZNF688P0C7X2 276 aa12.79□□□□□ -0.36
DDX41-217ENST00000515562 SPP1P10451 314 aa12.79□□□□□ -0.36
DDX41-217ENST00000515562 ATP5IP56385 69 aaPredicted RBP12.79□□□□□ -0.36
DDX41-217ENST00000515562 LYZL2Q7Z4W2 148 aa12.79□□□□□ -0.36
DDX41-217ENST00000515562 TRPT1Q86TN4 253 aaKnown RBP12.79□□□□□ -0.36
DDX41-217ENST00000515562 PHLDA1Q8WV24 401 aaPredicted RBP12.79□□□□□ -0.36
DDX41-217ENST00000515562 GLMPQ8WWB7 406 aa12.79□□□□□ -0.36
DDX41-217ENST00000515562 NPIPB3Q92617 1050 aa12.79□□□□□ -0.36
DDX41-217ENST00000515562 TRIM63Q969Q1 353 aa12.79□□□□□ -0.36
DDX41-217ENST00000515562 DUXBA0A1W2PPF3 345 aa12.78□□□□□ -0.36
DDX41-217ENST00000515562 RD3LP0DJH9 198 aa12.78□□□□□ -0.36
DDX41-217ENST00000515562 NUP62P37198 522 aaPredicted RBP12.78□□□□□ -0.36
DDX41-217ENST00000515562 KLF9Q13886 244 aaPredicted RBP12.78□□□□□ -0.36
DDX41-217ENST00000515562 USF2Q15853 346 aaPredicted RBP12.78□□□□□ -0.36
DDX41-217ENST00000515562 PYDC2Q56P42 97 aa12.78□□□□□ -0.36
DDX41-217ENST00000515562 MORN3Q6PF18 240 aaPredicted RBP12.78□□□□□ -0.36
DDX41-217ENST00000515562 C16orf54Q6UWD8 224 aa12.78□□□□□ -0.36
DDX41-217ENST00000515562 TOMM5Q8N4H5 51 aa12.78□□□□□ -0.36
DDX41-217ENST00000515562 OR1S1Q8NH92 325 aa12.78□□□□□ -0.36
DDX41-217ENST00000515562 C11orf45Q8TAV5 145 aa12.78□□□□□ -0.36
DDX41-217ENST00000515562 DEDD2Q8WXF8 326 aa12.78□□□□□ -0.36
DDX41-217ENST00000515562 RBKSQ9H477 322 aa12.78□□□□□ -0.36
DDX41-217ENST00000515562 DHRS2Q13268 280 aa12.77□□□□□ -0.37
DDX41-217ENST00000515562 TMEM128Q5BJH2 165 aa12.77□□□□□ -0.37
DDX41-217ENST00000515562 TMED4Q7Z7H5 227 aa12.77□□□□□ -0.37
DDX41-217ENST00000515562 IFNA4P05014 189 aa12.76□□□□□ -0.37
DDX41-217ENST00000515562 S100A5P33763 92 aa12.76□□□□□ -0.37
DDX41-217ENST00000515562 SNRPD3P62318 126 aaKnown RBP12.76□□□□□ -0.37
DDX41-217ENST00000515562 SLC25A21Q9BQT8 299 aaPredicted RBP12.76□□□□□ -0.37
DDX41-217ENST00000515562 SEPSECSQ9HD40 501 aaKnown RBP12.76□□□□□ -0.37
DDX41-217ENST00000515562 PFDN2Q9UHV9 154 aa12.76□□□□□ -0.37
DDX41-217ENST00000515562 V9GYH0 126 aa12.76□□□□□ -0.37
DDX41-217ENST00000515562 BIRC6Q9NR09 4857 aa12.76□□□□□ -0.37
DDX41-217ENST00000515562 BUB3O43684 328 aa12.75□□□□□ -0.37
DDX41-217ENST00000515562 PSG1P11464 419 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms