RNA–Protein interactions for RNA: ENST00000494973.1

APTX-231, Transcript of aprataxin, human

TSL 4

Gene APTX, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-231	ENST00000494973	GNPNAT1	Q96EK6	184 aa	Predicted RBP	10.51	□□□□□ -0.73
APTX-231	ENST00000494973	WDR61	Q9GZS3	305 aa	Known RBP	10.51	□□□□□ -0.73
APTX-231	ENST00000494973	PEF1	Q9UBV8	284 aa	Known RBP	10.51	□□□□□ -0.73
APTX-231	ENST00000494973	TGOLN2	O43493	480 aa		10.5	□□□□□ -0.73
APTX-231	ENST00000494973	IGLC1	P0CG04	106 aa		10.5	□□□□□ -0.73
APTX-231	ENST00000494973	TPT1	P13693	172 aa	Known RBP	10.5	□□□□□ -0.73
APTX-231	ENST00000494973	ZP3	P21754	424 aa		10.5	□□□□□ -0.73
APTX-231	ENST00000494973	FGF7	P21781	194 aa		10.5	□□□□□ -0.73
APTX-231	ENST00000494973	GPR183	P32249	361 aa		10.5	□□□□□ -0.73
APTX-231	ENST00000494973	ARL3	P36405	182 aa		10.5	□□□□□ -0.73
APTX-231	ENST00000494973	YPEL3	P61236	119 aa	Predicted RBP	10.5	□□□□□ -0.73
APTX-231	ENST00000494973	LGALSL	Q3ZCW2	172 aa	Predicted RBP	10.5	□□□□□ -0.73
APTX-231	ENST00000494973	BTNL8	Q6UX41	500 aa		10.5	□□□□□ -0.73
APTX-231	ENST00000494973	TAF15	Q92804	592 aa	Known RBP eCLIP	10.5	□□□□□ -0.73
APTX-231	ENST00000494973	CCDC140	Q96MF4	163 aa		10.5	□□□□□ -0.73
APTX-231	ENST00000494973	ZNF471	Q9BX82	626 aa	Predicted RBP	10.5	□□□□□ -0.73
APTX-231	ENST00000494973	LSM4	Q9Y4Z0	139 aa	Known RBP	10.5	□□□□□ -0.73
APTX-231	ENST00000494973	TIMM9	Q9Y5J7	89 aa		10.5	□□□□□ -0.73
APTX-231	ENST00000494973	ZFHX3	Q15911	3703 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	SETD2	Q9BYW2	2564 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-231	ENST00000494973	IGHV3-21	A0A0B4J1V1	117 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	BOLA2-SMG1P6	H3BVE0	249 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	GGCT	O75223	188 aa	Known RBP	10.49	□□□□□ -0.73
APTX-231	ENST00000494973	IGHV3-11	P01762	117 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	HSPB1	P04792	205 aa	Known RBP	10.49	□□□□□ -0.73
APTX-231	ENST00000494973	CLEC3B	P05452	202 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	CD28	P10747	220 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	CAMLG	P49069	296 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	KIAA0141	Q14154	515 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-231	ENST00000494973	OPCML	Q14982	345 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	PXDC1	Q5TGL8	231 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	CLEC19A	Q6UXS0	136 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	ZNF600	Q6ZNG1	722 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	KLHL30-AS1	Q8NEE0	82 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	BPIFC	Q8NFQ6	507 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	STOML3	Q8TAV4	291 aa		10.49	□□□□□ -0.73
APTX-231	ENST00000494973	PSMG3	Q9BT73	122 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-231	ENST00000494973	ATR	Q13535	2644 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	OR2T8	A6NH00	312 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	TOMM40	O96008	361 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	IGHV3-48	P01763	117 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	DEFA5	Q01523	94 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	MLANA	Q16655	118 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	TCTEX1D4	Q5JR98	221 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	C12orf54	Q6X4T0	127 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	LCNL1	Q6ZST4	164 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	CYP2G1P	Q6ZSU1	146 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973		Q8WTZ3	238 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	DPF1	Q92782	380 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	CITED2	Q99967	270 aa	Predicted RBP	10.48	□□□□□ -0.73
APTX-231	ENST00000494973	NPCDR1	Q9BY65	106 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	GNB4	Q9HAV0	340 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	PFDN2	Q9UHV9	154 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973	RNF24	Q9Y225	148 aa		10.48	□□□□□ -0.73
APTX-231	ENST00000494973		F8W735	103 aa	Predicted RBP	10.47	□□□□□ -0.73
APTX-231	ENST00000494973		I3L521	148 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973	AGPAT2	O15120	278 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973	IGHV3-23	P01764	117 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973	RD3L	P0DJH9	198 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973	RPL29	P47914	159 aa	Known RBP	10.47	□□□□□ -0.73
APTX-231	ENST00000494973	NKX2-5	P52952	324 aa	Predicted RBP	10.47	□□□□□ -0.73
APTX-231	ENST00000494973	ZNF616	Q08AN1	781 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973	RPEL1	Q2QD12	228 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973	RPL7L1	Q6DKI1	246 aa	Known RBP	10.47	□□□□□ -0.73
APTX-231	ENST00000494973	LAMTOR1	Q6IAA8	161 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973		Q6ZRG5	221 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973	BAP18	Q8IXM2	172 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973	CITED1	Q99966	193 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973	GINS3	Q9BRX5	216 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973	ZNF747	Q9BV97	191 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973	WFDC1	Q9HC57	220 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973	MRPL36	Q9P0J6	103 aa	Known RBP	10.47	□□□□□ -0.73
APTX-231	ENST00000494973		S4R3C0	116 aa		10.47	□□□□□ -0.73
APTX-231	ENST00000494973	ANKRD34B	A5PLL1	514 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	LINC01619	G3V211	115 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	NDUFA4	O00483	81 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	IGKV1-17	P01599	117 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	MB	P02144	154 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	CTSG	P08311	255 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	SERF2	P84101	59 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	FAM106A	Q4KMX7	169 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	SHISA2	Q6UWI4	295 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	C3orf56	Q8N813	242 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	HSD17B11	Q8NBQ5	300 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	OR4F17	Q8NGA8	305 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	OR51G1	Q8NGK1	321 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	PHYHIPL	Q96FC7	376 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	OR4F4	Q96R69	305 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	MGST2	Q99735	147 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	GGTLC1	Q9BX51	225 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	ARV1	Q9H2C2	271 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	CYTL1	Q9NRR1	136 aa		10.46	□□□□□ -0.73
APTX-231	ENST00000494973	IGKV1D-37	A0A075B6S9	117 aa		10.45	□□□□□ -0.74
APTX-231	ENST00000494973	IGKV1OR2-108	A0A075B7D4	117 aa		10.45	□□□□□ -0.74
APTX-231	ENST00000494973	BMPR1B	O00238	502 aa		10.45	□□□□□ -0.74
APTX-231	ENST00000494973	OR2C1	O95371	312 aa		10.45	□□□□□ -0.74
APTX-231	ENST00000494973	TSPAN15	O95858	294 aa		10.45	□□□□□ -0.74
APTX-231	ENST00000494973	SEC11B	P0C7V7	166 aa		10.45	□□□□□ -0.74
APTX-231	ENST00000494973	BMI1	P35226	326 aa		10.45	□□□□□ -0.74
APTX-231	ENST00000494973	B2M	P61769	119 aa		10.45	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms