RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CHD8Q9HCK8 2581 aa13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 E7EQL1 145 aa13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 NBL1P41271 181 aa13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 GAL3ST2Q9H3Q3 398 aa13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 TPSG1Q9NRR2 321 aa13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 H0YJW9 148 aa13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 COMPP49747 757 aaPredicted RBP13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 UBE2L3P68036 154 aaKnown RBP13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 SLAQ13239 276 aa13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 TBR1Q16650 682 aa13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 TMEM183BQ1AE95 376 aa13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 LEMD1Q68G75 181 aa13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 TXN2Q99757 166 aa13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 OR5G3P0C626 314 aa13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 RANP62826 216 aaKnown RBP13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 ZNF833PQ6ZTB9 187 aa13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 RNASE6Q93091 150 aaKnown RBP13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 LINC00574Q9H8X3 128 aa13.36□□□□□ -0.27
CCDC88B-210ENST00000494566 GRNP28799 593 aaKnown RBP13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 RUSC1-AS1Q66K80 236 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 TMEM68Q96MH6 324 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 LPAR2Q9HBW0 351 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 GOLT1BQ9Y3E0 138 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 A0A1W2PS18 150 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 NDUFB3O43676 98 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 PRR20EP86478 221 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 PRR20CP86479 221 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 PRR20DP86480 221 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 PRR20BP86481 221 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 PRR20AP86496 221 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 POU2AF1Q16633 256 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 LBHQ53QV2 105 aaPredicted RBP13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 LINC01560Q8TB33 94 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 IGFBPL1Q8WX77 278 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 MIEN1Q9BRT3 115 aa13.35□□□□□ -0.27
CCDC88B-210ENST00000494566 NCOR2Q9Y618 2525 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 SHISA9B4DS77 424 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 TCF21O43680 179 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 MT-CO2P00403 227 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 MOSP00540 346 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 APOA2P02652 100 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 GPX1P07203 203 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 RNASE2P10153 161 aaKnown RBP13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 USF1P22415 310 aaPredicted RBP13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 HINT1P49773 126 aaPredicted RBP13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 MFAP2P55001 183 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 FOXA3P55318 350 aaPredicted RBP13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 RPL8P62917 257 aaKnown RBP13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 COMMD5Q9GZQ3 224 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 GSX1Q9H4S2 264 aaPredicted RBP13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 BMPR1BO00238 502 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 BRS3P32247 399 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 Q56UQ5 140 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 HCP5Q6MZN7 132 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 Q6ZN92 141 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 KIR3DL3Q8N743 410 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 ZNF586Q9NXT0 402 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 CDC42EP3Q9UKI2 254 aa13.34□□□□□ -0.27
CCDC88B-210ENST00000494566 ENSAO43768 121 aaKnown RBP13.33□□□□□ -0.27
CCDC88B-210ENST00000494566 ORM2P19652 201 aa13.33□□□□□ -0.27
CCDC88B-210ENST00000494566 RNASEKQ6P5S7 137 aaKnown RBP13.33□□□□□ -0.27
CCDC88B-210ENST00000494566 TMEM136Q6ZRR5 245 aa13.33□□□□□ -0.27
CCDC88B-210ENST00000494566 Q71RC1 249 aaPredicted RBP13.33□□□□□ -0.27
CCDC88B-210ENST00000494566 FLYWCH2Q96CP2 140 aaKnown RBP13.33□□□□□ -0.27
CCDC88B-210ENST00000494566 MRPL36Q9P0J6 103 aaKnown RBP13.33□□□□□ -0.27
CCDC88B-210ENST00000494566 SLC45A2Q9UMX9 530 aa13.33□□□□□ -0.27
CCDC88B-210ENST00000494566 LOXP28300 417 aaPredicted RBP13.33□□□□□ -0.28
CCDC88B-210ENST00000494566 SELENOKQ9Y6D0 94 aa13.33□□□□□ -0.28
CCDC88B-210ENST00000494566 SLC25A17O43808 307 aa13.33□□□□□ -0.28
CCDC88B-210ENST00000494566 C3orf79P0CE67 100 aa13.33□□□□□ -0.28
CCDC88B-210ENST00000494566 ZNF137PP52743 207 aa13.33□□□□□ -0.28
CCDC88B-210ENST00000494566 LRRC10Q5BKY1 277 aa13.33□□□□□ -0.28
CCDC88B-210ENST00000494566 C11orf42Q8N5U0 333 aa13.33□□□□□ -0.28
CCDC88B-210ENST00000494566 NPIPB3Q92617 1050 aa13.33□□□□□ -0.28
CCDC88B-210ENST00000494566 CLEC5AQ9NY25 188 aa13.33□□□□□ -0.28
CCDC88B-210ENST00000494566 JKAMPQ9P055 326 aa13.33□□□□□ -0.28
CCDC88B-210ENST00000494566 FAM90A27PA6NNH2 459 aa13.32□□□□□ -0.28
CCDC88B-210ENST00000494566 WT1-ASQ06250 92 aa13.32□□□□□ -0.28
CCDC88B-210ENST00000494566 BET1LQ9NYM9 111 aa13.32□□□□□ -0.28
CCDC88B-210ENST00000494566 CGB1A6NKQ9 187 aa13.32□□□□□ -0.28
CCDC88B-210ENST00000494566 TCTAP57738 103 aa13.32□□□□□ -0.28
CCDC88B-210ENST00000494566 SELENOTP62341 195 aa13.32□□□□□ -0.28
CCDC88B-210ENST00000494566 TEX43Q6ZNM6 134 aa13.32□□□□□ -0.28
CCDC88B-210ENST00000494566 STPG4Q8N801 248 aa13.32□□□□□ -0.28
CCDC88B-210ENST00000494566 OR2D3Q8NGH3 330 aa13.32□□□□□ -0.28
CCDC88B-210ENST00000494566 ZNF257Q9Y2Q1 563 aa13.32□□□□□ -0.28
CCDC88B-210ENST00000494566 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 A0A1W2PRD5 423 aa13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 A0A1W2PRF3 423 aa13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 A0A1W2PRM7 423 aa13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 ISLRO14498 428 aa13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 DLEU1O43261 78 aa13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 LY6HO94772 140 aa13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 PAFAH1B2P68402 229 aa13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 TCF24Q7RTU0 167 aa13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 ZNF430Q9H8G1 570 aaPredicted RBP13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 TECRQ9NZ01 308 aaKnown RBP13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 RALYQ9UKM9 306 aaKnown RBP13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 APCSP02743 223 aa13.31□□□□□ -0.28
CCDC88B-210ENST00000494566 CNTFRP26992 372 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms