RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SRRM5B3KS81 715 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 PEX7O00628 323 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 TREML4Q6UXN2 200 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 COX11Q9Y6N1 276 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 PIEZO2Q9H5I5 2752 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 LOC105371242A0A075B767 164 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 NDUFS8O00217 210 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 TCF24Q7RTU0 167 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 MOSP00540 346 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 SPATA31B1PQ5VZV4 182 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 NAA38Q9BRA0 125 aaKnown RBP13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 GGTLC1Q9BX51 225 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 SLC25A15Q9Y619 301 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 ZNF503-AS2A6NEH8 195 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 APOHP02749 345 aaPredicted RBP13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 LINC00205P59089 165 aa13.47□□□□□ -0.25
CCDC88B-209ENST00000494080 F5H697 171 aa13.46□□□□□ -0.25
CCDC88B-209ENST00000494080 MLNRO43193 412 aa13.46□□□□□ -0.25
CCDC88B-209ENST00000494080 PSG1P11464 419 aa13.46□□□□□ -0.25
CCDC88B-209ENST00000494080 FBXL15Q9H469 300 aa13.46□□□□□ -0.25
CCDC88B-209ENST00000494080 YPEL1O60688 119 aa13.46□□□□□ -0.25
CCDC88B-209ENST00000494080 TYMSP04818 313 aa13.46□□□□□ -0.25
CCDC88B-209ENST00000494080 HTN1P15515 57 aa13.46□□□□□ -0.25
CCDC88B-209ENST00000494080 PLA2G2CQ5R387 149 aa13.46□□□□□ -0.25
CCDC88B-209ENST00000494080 FAM90A1Q86YD7 464 aa13.46□□□□□ -0.25
CCDC88B-209ENST00000494080 YPEL2Q96QA6 119 aa13.46□□□□□ -0.25
CCDC88B-209ENST00000494080 MRPL32Q9BYC8 188 aaKnown RBP13.46□□□□□ -0.25
CCDC88B-209ENST00000494080 SEPSECSQ9HD40 501 aaKnown RBP13.46□□□□□ -0.25
CCDC88B-209ENST00000494080 COL4A4P53420 1690 aaPredicted RBP13.46□□□□□ -0.25
CCDC88B-209ENST00000494080 H3BVH4 76 aa13.46□□□□□ -0.26
CCDC88B-209ENST00000494080 TM4SF5O14894 197 aa13.46□□□□□ -0.26
CCDC88B-209ENST00000494080 IGHG3P01860 377 aa13.46□□□□□ -0.26
CCDC88B-209ENST00000494080 RPL30P62888 115 aaKnown RBP13.46□□□□□ -0.26
CCDC88B-209ENST00000494080 IGKV1D-33P01593 117 aa13.46□□□□□ -0.26
CCDC88B-209ENST00000494080 IGKV1-33P01594 117 aa13.46□□□□□ -0.26
CCDC88B-209ENST00000494080 COLCA1Q6ZS62 124 aa13.46□□□□□ -0.26
CCDC88B-209ENST00000494080 RPRMLQ8N4K4 120 aa13.46□□□□□ -0.26
CCDC88B-209ENST00000494080 OSR1Q8TAX0 266 aaPredicted RBP13.46□□□□□ -0.26
CCDC88B-209ENST00000494080 LINC00312Q9Y6C7 94 aa13.46□□□□□ -0.26
CCDC88B-209ENST00000494080 YLPM1P49750 1951 aaKnown RBP13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 IGHV3OR16-10A0A075B7F0 116 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 OR9G9P0C7N8 305 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 SMIM17P0DL12 118 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 DUTP33316 252 aaKnown RBP13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 HOXA4Q00056 320 aaPredicted RBP13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 SMAGPQ0VAQ4 97 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 LYRM7Q5U5X0 104 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 TMEM136Q6ZRR5 245 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 GOLT1AQ6ZVE7 132 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 SLC25A33Q9BSK2 321 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 LOC107984156A0A0G2JMH3 177 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 ZNF788Q6ZQV5 615 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 ARL17AQ8IVW1 177 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 S4R3C0 116 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 TRAV30A0A087WSZ9 112 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 SMIM13P0DJ93 91 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 TMEM30BQ3MIR4 351 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 ZNF474Q6S9Z5 364 aaPredicted RBP13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 CLEC2AQ6UVW9 174 aa13.45□□□□□ -0.26
CCDC88B-209ENST00000494080 IGKV1-6A0A0C4DH72 117 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 FAM181BA6NEQ2 426 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 RPL7P18124 248 aaKnown RBP13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 TWIST1Q15672 202 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 CD177Q8N6Q3 437 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 ST20Q9HBF5 79 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 hDV102S1A0JD36 115 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 LY6DQ14210 128 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 LINC00305Q7Z4B0 112 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 STPG4Q8N801 248 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 MYOZ3Q8TDC0 251 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 ZNF414Q96IQ9 312 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 TMEM189A5PLL7 270 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 IGLC2P0DOY2 106 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 IGLC3P0DOY3 106 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 SRSF7Q16629 238 aaKnown RBP eCLIP13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 Q6ZS92 163 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 Q6P435 159 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 OR4A5Q8NH83 315 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 C18orf15Q96N68 181 aa13.44□□□□□ -0.26
CCDC88B-209ENST00000494080 CSPG4Q6UVK1 2322 aa13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 NBEAP1P0C6P0 100 aa13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 WDR31Q8NA23 367 aa13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 OR2K2Q8NGT1 345 aa13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 RNASE6Q93091 150 aaKnown RBP13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 CHODLQ9H9P2 273 aa13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 ANKHD1Q8IWZ3 2542 aaKnown RBP13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 FAM106CPP0CH98 169 aa13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 CEACAM8P31997 349 aaPredicted RBP13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 ASCL4Q6XD76 172 aa13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 Q6ZVH6 145 aa13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 RNASE8Q8TDE3 154 aaKnown RBP13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 JKAMPQ9P055 326 aa13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 SAA1P0DJI8 122 aaPredicted RBP13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 FCGR2BP31994 310 aaPredicted RBP13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 COA6Q5JTJ3 125 aaKnown RBP13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 HIST1H4GQ99525 98 aa13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 IFI27L2Q9H2X8 130 aa13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 RPP21Q9H633 154 aaKnown RBP13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 PCNX3Q9H6A9 2034 aa13.43□□□□□ -0.26
CCDC88B-209ENST00000494080 OR2T8A6NH00 312 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 248.4 ms