RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 U3KQ87 197 aa11.23□□□□□ -0.61
USP39-217ENST00000491659 A0A1W2PS18 150 aa11.22□□□□□ -0.61
USP39-217ENST00000491659 NAP1L6A6NFF2 107 aa11.22□□□□□ -0.61
USP39-217ENST00000491659 NPPCP23582 126 aa11.22□□□□□ -0.61
USP39-217ENST00000491659 CMC4P56277 68 aaPredicted RBP11.22□□□□□ -0.61
USP39-217ENST00000491659 TIGITQ495A1 244 aa11.22□□□□□ -0.61
USP39-217ENST00000491659 PRSS54Q6PEW0 395 aa11.22□□□□□ -0.61
USP39-217ENST00000491659 IGHV3-66A0A0C4DH42 116 aa11.21□□□□□ -0.61
USP39-217ENST00000491659 SFT2D2O95562 160 aa11.21□□□□□ -0.61
USP39-217ENST00000491659 IGKV1-17P01599 117 aa11.21□□□□□ -0.61
USP39-217ENST00000491659 OR10J1P30954 320 aa11.21□□□□□ -0.61
USP39-217ENST00000491659 PPP1R1AQ13522 171 aa11.21□□□□□ -0.61
USP39-217ENST00000491659 RGS21Q2M5E4 152 aa11.21□□□□□ -0.61
USP39-217ENST00000491659 FAM90A2PQ658T7 463 aa11.21□□□□□ -0.61
USP39-217ENST00000491659 GBGT1Q8N5D6 347 aa11.21□□□□□ -0.61
USP39-217ENST00000491659 LRTM2Q8N967 370 aa11.21□□□□□ -0.61
USP39-217ENST00000491659 TMEM170AQ8WVE7 144 aa11.21□□□□□ -0.61
USP39-217ENST00000491659 DNASE2O00115 360 aaPredicted RBP11.2□□□□□ -0.62
USP39-217ENST00000491659 APOHP02749 345 aaPredicted RBP11.2□□□□□ -0.62
USP39-217ENST00000491659 IGLC1P0CG04 106 aa11.2□□□□□ -0.62
USP39-217ENST00000491659 ATP5IP56385 69 aaPredicted RBP11.2□□□□□ -0.62
USP39-217ENST00000491659 UBE2MP61081 183 aaKnown RBP11.2□□□□□ -0.62
USP39-217ENST00000491659 RPL11P62913 178 aaKnown RBP11.2□□□□□ -0.62
USP39-217ENST00000491659 BAK1Q16611 211 aa11.2□□□□□ -0.62
USP39-217ENST00000491659 ZFAND6Q6FIF0 208 aa11.2□□□□□ -0.62
USP39-217ENST00000491659 Q8WTZ3 238 aa11.2□□□□□ -0.62
USP39-217ENST00000491659 ACY3Q96HD9 319 aa11.2□□□□□ -0.62
USP39-217ENST00000491659 GRAMD2BQ96HH9 432 aa11.2□□□□□ -0.62
USP39-217ENST00000491659 TMED3Q9Y3Q3 217 aa11.2□□□□□ -0.62
USP39-217ENST00000491659 DNAH7Q8WXX0 4024 aa11.2□□□□□ -0.62
USP39-217ENST00000491659 CENPXA8MT69 81 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 FAM90A26D6RGX4 464 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 MED6O75586 246 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 DFFBO76075 338 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 IFNA4P05014 189 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 SLC25A6P12236 298 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 RPL35AP18077 110 aaKnown RBP11.19□□□□□ -0.62
USP39-217ENST00000491659 CRYBB3P26998 211 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 YPEL3P61236 119 aaPredicted RBP11.19□□□□□ -0.62
USP39-217ENST00000491659 WFDC3Q8IUB2 231 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 APRG1Q8IVJ8 170 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 STPG3Q8N7X2 389 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 IL17DQ8TAD2 202 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 MS4A6AQ9H2W1 248 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 MAP6D1Q9H9H5 199 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 NBEAL2Q6ZNJ1 2754 aa11.19□□□□□ -0.62
USP39-217ENST00000491659 TRAV2A0A0B4J234 112 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 KIR2DL5BA0A0G2JN68 375 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 KIR2DL5BA0A0G2JPC4 375 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 LINC00854A0A1B0GVQ3 168 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 UBE2CO00762 179 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 PITX3O75364 302 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 NDUFB6O95139 128 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 HNRNPCP07910 306 aaKnown RBP eCLIP11.18□□□□□ -0.62
USP39-217ENST00000491659 HOXB5P09067 269 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 P2RY1P47900 373 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 EIF2B2P49770 351 aaKnown RBP11.18□□□□□ -0.62
USP39-217ENST00000491659 DEFA1P59665 94 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 DEFA3P59666 94 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 Q6ZWC4 215 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 KIR2DL5AQ8N109 375 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 KIR2DL5BQ8NHK3 375 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 NPIPB3Q92617 1050 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 SLC35E1Q96K37 410 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 C7orf50Q9BRJ6 194 aaKnown RBP11.18□□□□□ -0.62
USP39-217ENST00000491659 OVOL2Q9BRP0 275 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 RABAC1Q9UI14 185 aa11.18□□□□□ -0.62
USP39-217ENST00000491659 UPK1BO75841 260 aa11.17□□□□□ -0.62
USP39-217ENST00000491659 TOMM40O96008 361 aa11.17□□□□□ -0.62
USP39-217ENST00000491659 IL4P05112 153 aa11.17□□□□□ -0.62
USP39-217ENST00000491659 IAPPP10997 89 aa11.17□□□□□ -0.62
USP39-217ENST00000491659 RAB11AP62491 216 aa11.17□□□□□ -0.62
USP39-217ENST00000491659 DEFB135Q30KP9 77 aa11.17□□□□□ -0.62
USP39-217ENST00000491659 LILRB2Q8N423 598 aa11.17□□□□□ -0.62
USP39-217ENST00000491659 STXBP6Q8NFX7 210 aa11.17□□□□□ -0.62
USP39-217ENST00000491659 CIB3Q96Q77 187 aaPredicted RBP11.17□□□□□ -0.62
USP39-217ENST00000491659 CCDC32Q9BV29 185 aa11.17□□□□□ -0.62
USP39-217ENST00000491659 PAIP2BQ9ULR5 123 aaKnown RBP11.17□□□□□ -0.62
USP39-217ENST00000491659 TP53TG1Q9Y2A0 90 aa11.17□□□□□ -0.62
USP39-217ENST00000491659 SPRY2O43597 315 aa11.16□□□□□ -0.62
USP39-217ENST00000491659 IL7P13232 177 aa11.16□□□□□ -0.62
USP39-217ENST00000491659 GPX4P36969 197 aaPredicted RBP11.16□□□□□ -0.62
USP39-217ENST00000491659 RPP30P78346 268 aaKnown RBP11.16□□□□□ -0.62
USP39-217ENST00000491659 ZNF124Q15973 351 aa11.16□□□□□ -0.62
USP39-217ENST00000491659 GGNBP1Q5YKI7 109 aa11.16□□□□□ -0.62
USP39-217ENST00000491659 Q6ZNX1 250 aa11.16□□□□□ -0.62
USP39-217ENST00000491659 COQ8AQ8NI60 647 aa11.16□□□□□ -0.62
USP39-217ENST00000491659 SDHCQ99643 169 aaPredicted RBP11.16□□□□□ -0.62
USP39-217ENST00000491659 KMT2CQ8NEZ4 4911 aaKnown RBP11.16□□□□□ -0.62
USP39-217ENST00000491659 C9orf170A2RU37 121 aa11.15□□□□□ -0.62
USP39-217ENST00000491659 HELTA6NFD8 242 aa11.15□□□□□ -0.62
USP39-217ENST00000491659 ZFP92A6NM28 416 aa11.15□□□□□ -0.62
USP39-217ENST00000491659 SYNGR2O43760 224 aa11.15□□□□□ -0.62
USP39-217ENST00000491659 RD3LP0DJH9 198 aa11.15□□□□□ -0.62
USP39-217ENST00000491659 DEFB131AP59861 70 aa11.15□□□□□ -0.62
USP39-217ENST00000491659 USF2Q15853 346 aaPredicted RBP11.15□□□□□ -0.62
USP39-217ENST00000491659 FLVCR2Q9UPI3 526 aa11.15□□□□□ -0.62
USP39-217ENST00000491659 FABP1P07148 127 aa11.14□□□□□ -0.63
USP39-217ENST00000491659 OR4E1P0C645 316 aa11.14□□□□□ -0.63
USP39-217ENST00000491659 BTCP35070 178 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms