RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 SCGB2A1O75556 95 aa18.48■□□□□ 0.55
HMGN1-217ENST00000489072 IFNA10P01566 189 aa18.48■□□□□ 0.55
HMGN1-217ENST00000489072 NPPCP23582 126 aa18.48■□□□□ 0.55
HMGN1-217ENST00000489072 PPP1R1AQ13522 171 aa18.48■□□□□ 0.55
HMGN1-217ENST00000489072 LRTM2Q8N967 370 aa18.48■□□□□ 0.55
HMGN1-217ENST00000489072 OR1S2Q8NGQ3 325 aa18.48■□□□□ 0.55
HMGN1-217ENST00000489072 OR1S1Q8NH92 325 aa18.48■□□□□ 0.55
HMGN1-217ENST00000489072 MAP6D1Q9H9H5 199 aa18.48■□□□□ 0.55
HMGN1-217ENST00000489072 SACSQ9NZJ4 4579 aa18.48■□□□□ 0.55
HMGN1-217ENST00000489072 PITX3O75364 302 aa18.47■□□□□ 0.55
HMGN1-217ENST00000489072 CD5P06127 495 aa18.47■□□□□ 0.55
HMGN1-217ENST00000489072 RPL35AP18077 110 aaKnown RBP18.47■□□□□ 0.55
HMGN1-217ENST00000489072 CRYBB3P26998 211 aa18.47■□□□□ 0.55
HMGN1-217ENST00000489072 OR10J1P30954 320 aa18.47■□□□□ 0.55
HMGN1-217ENST00000489072 APOC4P55056 127 aa18.47■□□□□ 0.55
HMGN1-217ENST00000489072 METTL26Q96S19 204 aa18.47■□□□□ 0.55
HMGN1-217ENST00000489072 SDHCQ99643 169 aaPredicted RBP18.47■□□□□ 0.55
HMGN1-217ENST00000489072 MS4A6AQ9H2W1 248 aa18.47■□□□□ 0.55
HMGN1-217ENST00000489072 U3KQ87 197 aa18.47■□□□□ 0.55
HMGN1-217ENST00000489072 SFT2D2O95562 160 aa18.46■□□□□ 0.55
HMGN1-217ENST00000489072 ETFRF1Q6IPR1 90 aa18.46■□□□□ 0.55
HMGN1-217ENST00000489072 NOXA1Q86UR1 476 aa18.46■□□□□ 0.55
HMGN1-217ENST00000489072 WFDC3Q8IUB2 231 aa18.46■□□□□ 0.55
HMGN1-217ENST00000489072 CENPSQ8N2Z9 138 aa18.46■□□□□ 0.55
HMGN1-217ENST00000489072 NPIPB3Q92617 1050 aa18.46■□□□□ 0.55
HMGN1-217ENST00000489072 KIR2DL5BA0A0G2JN68 375 aa18.45■□□□□ 0.54
HMGN1-217ENST00000489072 KIR2DL5BA0A0G2JPC4 375 aa18.45■□□□□ 0.54
HMGN1-217ENST00000489072 YPEL3P61236 119 aaPredicted RBP18.45■□□□□ 0.54
HMGN1-217ENST00000489072 PAFAH1B2P68402 229 aa18.45■□□□□ 0.54
HMGN1-217ENST00000489072 RBMS2Q15434 407 aaKnown RBP18.45■□□□□ 0.54
HMGN1-217ENST00000489072 DEFB135Q30KP9 77 aa18.45■□□□□ 0.54
HMGN1-217ENST00000489072 Q6ZWC4 215 aa18.45■□□□□ 0.54
HMGN1-217ENST00000489072 KIR2DL5AQ8N109 375 aa18.45■□□□□ 0.54
HMGN1-217ENST00000489072 KIR2DL5BQ8NHK3 375 aa18.45■□□□□ 0.54
HMGN1-217ENST00000489072 ACY3Q96HD9 319 aa18.45■□□□□ 0.54
HMGN1-217ENST00000489072 TMEM231Q9H6L2 316 aa18.45■□□□□ 0.54
HMGN1-217ENST00000489072 PIGBOS1A0A0B4J2F0 54 aa18.44■□□□□ 0.54
HMGN1-217ENST00000489072 UBE2CO00762 179 aa18.44■□□□□ 0.54
HMGN1-217ENST00000489072 CMC4P56277 68 aaPredicted RBP18.44■□□□□ 0.54
HMGN1-217ENST00000489072 TRIQKQ629K1 86 aa18.44■□□□□ 0.54
HMGN1-217ENST00000489072 FAM24BQ8N5W8 94 aa18.44■□□□□ 0.54
HMGN1-217ENST00000489072 A0A1W2PS18 150 aa18.43■□□□□ 0.54
HMGN1-217ENST00000489072 DNASE2O00115 360 aaPredicted RBP18.43■□□□□ 0.54
HMGN1-217ENST00000489072 P2RY1P47900 373 aa18.43■□□□□ 0.54
HMGN1-217ENST00000489072 RPL11P62913 178 aaKnown RBP18.43■□□□□ 0.54
HMGN1-217ENST00000489072 STPG3Q8N7X2 389 aa18.43■□□□□ 0.54
HMGN1-217ENST00000489072 Q8WTZ3 238 aa18.43■□□□□ 0.54
HMGN1-217ENST00000489072 TP53TG1Q9Y2A0 90 aa18.43■□□□□ 0.54
HMGN1-217ENST00000489072 U3KQE9 123 aa18.43■□□□□ 0.54
HMGN1-217ENST00000489072 TRAV2A0A0B4J234 112 aa18.42■□□□□ 0.54
HMGN1-217ENST00000489072 SPRY2O43597 315 aa18.42■□□□□ 0.54
HMGN1-217ENST00000489072 SLC25A6P12236 298 aa18.42■□□□□ 0.54
HMGN1-217ENST00000489072 INPP1P49441 399 aa18.42■□□□□ 0.54
HMGN1-217ENST00000489072 TMED3Q9Y3Q3 217 aa18.42■□□□□ 0.54
HMGN1-217ENST00000489072 LINC00854A0A1B0GVQ3 168 aa18.41■□□□□ 0.54
HMGN1-217ENST00000489072 NAP1L6A6NFF2 107 aa18.41■□□□□ 0.54
HMGN1-217ENST00000489072 NDUFB6O95139 128 aa18.41■□□□□ 0.54
HMGN1-217ENST00000489072 IFNA4P05014 189 aa18.41■□□□□ 0.54
HMGN1-217ENST00000489072 IAPPP10997 89 aa18.41■□□□□ 0.54
HMGN1-217ENST00000489072 USF2Q15853 346 aaPredicted RBP18.41■□□□□ 0.54
HMGN1-217ENST00000489072 RABAC1Q9UI14 185 aa18.41■□□□□ 0.54
HMGN1-217ENST00000489072 FLVCR2Q9UPI3 526 aa18.41■□□□□ 0.54
HMGN1-217ENST00000489072 AGRNO00468 2067 aa18.41■□□□□ 0.54
HMGN1-217ENST00000489072 TOMM40O96008 361 aa18.4■□□□□ 0.54
HMGN1-217ENST00000489072 HOXB5P09067 269 aa18.4■□□□□ 0.54
HMGN1-217ENST00000489072 ATP5IP56385 69 aaPredicted RBP18.4■□□□□ 0.54
HMGN1-217ENST00000489072 DEFB131AP59861 70 aa18.4■□□□□ 0.54
HMGN1-217ENST00000489072 UBE2MP61081 183 aaKnown RBP18.4■□□□□ 0.54
HMGN1-217ENST00000489072 STXBP6Q8NFX7 210 aa18.4■□□□□ 0.54
HMGN1-217ENST00000489072 IL17DQ8TAD2 202 aa18.4■□□□□ 0.54
HMGN1-217ENST00000489072 RNF183Q96D59 192 aa18.4■□□□□ 0.54
HMGN1-217ENST00000489072 FAM90A26D6RGX4 464 aa18.39■□□□□ 0.53
HMGN1-217ENST00000489072 K7EQG2 157 aa18.39■□□□□ 0.53
HMGN1-217ENST00000489072 IL4P05112 153 aa18.39■□□□□ 0.53
HMGN1-217ENST00000489072 HNRNPCP07910 306 aaKnown RBP eCLIP18.39■□□□□ 0.535e-6■■■□□ 18.1
HMGN1-217ENST00000489072 BTCP35070 178 aa18.39■□□□□ 0.53
HMGN1-217ENST00000489072 GGNBP1Q5YKI7 109 aa18.39■□□□□ 0.53
HMGN1-217ENST00000489072 NARS2Q96I59 477 aaKnown RBP18.39■□□□□ 0.53
HMGN1-217ENST00000489072 C9orf170A2RU37 121 aa18.38■□□□□ 0.53
HMGN1-217ENST00000489072 RD3LP0DJH9 198 aa18.38■□□□□ 0.53
HMGN1-217ENST00000489072 GAMTQ14353 236 aa18.38■□□□□ 0.53
HMGN1-217ENST00000489072 LEMD1Q68G75 181 aa18.38■□□□□ 0.53
HMGN1-217ENST00000489072 C16orf54Q6UWD8 224 aa18.38■□□□□ 0.53
HMGN1-217ENST00000489072 GLMPQ8WWB7 406 aa18.38■□□□□ 0.53
HMGN1-217ENST00000489072 MAGT1Q9H0U3 335 aa18.38■□□□□ 0.53
HMGN1-217ENST00000489072 IGKV1D-37A0A075B6S9 117 aa18.37■□□□□ 0.53
HMGN1-217ENST00000489072 LCE6AA0A183 80 aa18.37■□□□□ 0.53
HMGN1-217ENST00000489072 PSG1P11464 419 aa18.37■□□□□ 0.53
HMGN1-217ENST00000489072 IL7P13232 177 aa18.37■□□□□ 0.53
HMGN1-217ENST00000489072 GPX4P36969 197 aaPredicted RBP18.37■□□□□ 0.53
HMGN1-217ENST00000489072 DCANP1Q8TF63 244 aa18.37■□□□□ 0.53
HMGN1-217ENST00000489072 GRAMD2BQ96HH9 432 aa18.37■□□□□ 0.53
HMGN1-217ENST00000489072 CSTL1Q9H114 145 aa18.37■□□□□ 0.53
HMGN1-217ENST00000489072 NDUFA13Q9P0J0 144 aa18.37■□□□□ 0.53
HMGN1-217ENST00000489072 A0A0J9YWU9 116 aa18.36■□□□□ 0.53
HMGN1-217ENST00000489072 ADAP1O75689 374 aa18.36■□□□□ 0.53
HMGN1-217ENST00000489072 EWSR1Q01844 656 aaKnown RBP eCLIP18.36■□□□□ 0.53
HMGN1-217ENST00000489072 LYG2Q86SG7 212 aa18.36■□□□□ 0.53
HMGN1-217ENST00000489072 SLC35E1Q96K37 410 aa18.36■□□□□ 0.53
HMGN1-217ENST00000489072 SYNGR2O43760 224 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms