RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	TMEM222	Q9H0R3	208 aa		13.34	□□□□□ -0.27
HDAC6-231	ENST00000488905		U3KQE9	123 aa		13.34	□□□□□ -0.27
HDAC6-231	ENST00000488905	TRAV10	A0A0B4J240	114 aa		13.33	□□□□□ -0.28
HDAC6-231	ENST00000488905	HELT	A6NFD8	242 aa		13.33	□□□□□ -0.28
HDAC6-231	ENST00000488905	RAB3D	O95716	219 aa		13.33	□□□□□ -0.28
HDAC6-231	ENST00000488905	HNRNPC	P07910	306 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
HDAC6-231	ENST00000488905	OR5AC1	P0C628	307 aa		13.33	□□□□□ -0.28
HDAC6-231	ENST00000488905	DHRS2	Q13268	280 aa		13.33	□□□□□ -0.28
HDAC6-231	ENST00000488905	TMEM229B	Q8NBD8	167 aa		13.33	□□□□□ -0.28
HDAC6-231	ENST00000488905	LHFPL5	Q8TAF8	219 aa		13.33	□□□□□ -0.28
HDAC6-231	ENST00000488905	GLMP	Q8WWB7	406 aa		13.33	□□□□□ -0.28
HDAC6-231	ENST00000488905	ABHD1	Q96SE0	405 aa		13.33	□□□□□ -0.28
HDAC6-231	ENST00000488905	CLEC5A	Q9NY25	188 aa		13.33	□□□□□ -0.28
HDAC6-231	ENST00000488905	TBC1D24	Q9ULP9	559 aa		13.33	□□□□□ -0.28
HDAC6-231	ENST00000488905	ELOA3C	A0A087WX78	387 aa	Predicted RBP	13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	GABARAP	O95166	117 aa		13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	CDS2	O95674	445 aa		13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	SLC25A4	P12235	298 aa		13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	RND2	P52198	227 aa		13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	C2orf83	Q53S99	150 aa		13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	PSMG4	Q5JS54	123 aa		13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	STEAP1B	Q6NZ63	245 aa		13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	PRSS54	Q6PEW0	395 aa		13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	C16orf54	Q6UWD8	224 aa		13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	CSNK1G2-AS1	Q8NCQ2	148 aa		13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	C15orf40	Q8WUR7	153 aa		13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	RBPMS	Q93062	196 aa	Known RBP	13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	HEYL	Q9NQ87	328 aa	Predicted RBP	13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	13.32	□□□□□ -0.28
HDAC6-231	ENST00000488905	IGHV4-4	A0A075B6R2	117 aa		13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	ZNF182	P17025	639 aa	Predicted RBP	13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	OR10J1	P30954	320 aa		13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	YPEL3	P61236	119 aa	Predicted RBP	13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	CTF1	Q16619	201 aa		13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	FAAP20	Q6NZ36	180 aa		13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	CENPS	Q8N2Z9	138 aa		13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	SLC24A4	Q8NFF2	622 aa		13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	RNASEH2C	Q8TDP1	164 aa	Known RBP	13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905		Q8WTZ3	238 aa		13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	GLYATL2	Q8WU03	294 aa		13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	NAA50	Q9GZZ1	169 aa	Known RBP	13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	NAA60	Q9H7X0	242 aa		13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	CACNG5	Q9UF02	275 aa		13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	C14orf166	Q9Y224	244 aa	Known RBP	13.31	□□□□□ -0.28
HDAC6-231	ENST00000488905	IL4	P05112	153 aa		13.3	□□□□□ -0.28
HDAC6-231	ENST00000488905	AP2S1	P53680	142 aa	Predicted RBP	13.3	□□□□□ -0.28
HDAC6-231	ENST00000488905	USF2	Q15853	346 aa	Predicted RBP	13.3	□□□□□ -0.28
HDAC6-231	ENST00000488905	RAB40C	Q96S21	281 aa		13.3	□□□□□ -0.28
HDAC6-231	ENST00000488905	CELA1	Q9UNI1	258 aa		13.3	□□□□□ -0.28
HDAC6-231	ENST00000488905	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	13.29	□□□□□ -0.28
HDAC6-231	ENST00000488905	CEBPZOS	A8MTT3	80 aa		13.29	□□□□□ -0.28
HDAC6-231	ENST00000488905	GABARAP	H6UMI1	98 aa		13.29	□□□□□ -0.28
HDAC6-231	ENST00000488905	SNRPD3	P62318	126 aa	Known RBP	13.29	□□□□□ -0.28
HDAC6-231	ENST00000488905	DHODH	Q02127	395 aa		13.29	□□□□□ -0.28
HDAC6-231	ENST00000488905	SSBP1	Q04837	148 aa	Known RBP	13.29	□□□□□ -0.28
HDAC6-231	ENST00000488905	MEF2D	Q14814	521 aa		13.29	□□□□□ -0.28
HDAC6-231	ENST00000488905	GPR107	Q5VW38	600 aa		13.29	□□□□□ -0.28
HDAC6-231	ENST00000488905	SELENOH	Q8IZQ5	122 aa	Known RBP	13.29	□□□□□ -0.28
HDAC6-231	ENST00000488905	TMEM170A	Q8WVE7	144 aa		13.29	□□□□□ -0.28
HDAC6-231	ENST00000488905	RTBDN	Q9BSG5	229 aa	Predicted RBP	13.29	□□□□□ -0.28
HDAC6-231	ENST00000488905	RNF126	Q9BV68	326 aa		13.29	□□□□□ -0.28
HDAC6-231	ENST00000488905	FAM90A26	D6RGX4	464 aa		13.28	□□□□□ -0.28
HDAC6-231	ENST00000488905	AMBP	P02760	352 aa		13.28	□□□□□ -0.28
HDAC6-231	ENST00000488905	NPY1R	P25929	384 aa		13.28	□□□□□ -0.28
HDAC6-231	ENST00000488905	SURF2	Q15527	256 aa	Predicted RBP	13.28	□□□□□ -0.28
HDAC6-231	ENST00000488905	TMEM268	Q5VZI3	342 aa		13.28	□□□□□ -0.28
HDAC6-231	ENST00000488905	ETFRF1	Q6IPR1	90 aa		13.28	□□□□□ -0.28
HDAC6-231	ENST00000488905	GPR146	Q96CH1	333 aa		13.28	□□□□□ -0.28
HDAC6-231	ENST00000488905	C1QTNF4	Q9BXJ3	329 aa		13.28	□□□□□ -0.28
HDAC6-231	ENST00000488905	NRN1	Q9NPD7	142 aa		13.28	□□□□□ -0.28
HDAC6-231	ENST00000488905	DYNC1H1	Q14204	4646 aa	Known RBP	13.27	□□□□□ -0.28
HDAC6-231	ENST00000488905	CRYM-AS1	A6NIL9	109 aa		13.27	□□□□□ -0.29
HDAC6-231	ENST00000488905	GSTZ1	O43708	216 aa	Predicted RBP	13.27	□□□□□ -0.29
HDAC6-231	ENST00000488905	NXPH3	O95157	252 aa		13.27	□□□□□ -0.29
HDAC6-231	ENST00000488905	NUTF2	P61970	127 aa	Known RBP	13.27	□□□□□ -0.29
HDAC6-231	ENST00000488905	MRPS10	P82664	201 aa	Known RBP	13.27	□□□□□ -0.29
HDAC6-231	ENST00000488905	SIGLEC15	Q6ZMC9	328 aa		13.27	□□□□□ -0.29
HDAC6-231	ENST00000488905	MIXL1	Q9H2W2	232 aa		13.27	□□□□□ -0.29
HDAC6-231	ENST00000488905	SEPSECS	Q9HD40	501 aa	Known RBP	13.27	□□□□□ -0.29
HDAC6-231	ENST00000488905	DISC1	C4P0D8	188 aa		13.26	□□□□□ -0.29
HDAC6-231	ENST00000488905	BUB3	O43684	328 aa		13.26	□□□□□ -0.29
HDAC6-231	ENST00000488905	TOMM40	O96008	361 aa		13.26	□□□□□ -0.29
HDAC6-231	ENST00000488905	C12orf74	Q32Q52	190 aa		13.26	□□□□□ -0.29
HDAC6-231	ENST00000488905	ZNF767P	Q75MW2	155 aa		13.26	□□□□□ -0.29
HDAC6-231	ENST00000488905	OR4C16	Q8NGL9	310 aa		13.26	□□□□□ -0.29
HDAC6-231	ENST00000488905	SMIM4	Q8WVI0	70 aa		13.26	□□□□□ -0.29
HDAC6-231	ENST00000488905	NPIPB3	Q92617	1050 aa		13.26	□□□□□ -0.29
HDAC6-231	ENST00000488905	ACY3	Q96HD9	319 aa		13.26	□□□□□ -0.29
HDAC6-231	ENST00000488905	XCL2	Q9UBD3	114 aa		13.26	□□□□□ -0.29
HDAC6-231	ENST00000488905	PKD1	P98161	4303 aa		13.26	□□□□□ -0.29
HDAC6-231	ENST00000488905	DEFB131B	A0A096LNP1	70 aa		13.25	□□□□□ -0.29
HDAC6-231	ENST00000488905		H3BMM0	161 aa		13.25	□□□□□ -0.29
HDAC6-231	ENST00000488905	RGS5	O15539	181 aa		13.25	□□□□□ -0.29
HDAC6-231	ENST00000488905	SMIM18	P0DKX4	95 aa		13.25	□□□□□ -0.29
HDAC6-231	ENST00000488905	NMS	Q5H8A3	153 aa		13.25	□□□□□ -0.29
HDAC6-231	ENST00000488905	NOXA1	Q86UR1	476 aa		13.25	□□□□□ -0.29
HDAC6-231	ENST00000488905	CACFD1	Q9UGQ2	172 aa		13.25	□□□□□ -0.29
HDAC6-231	ENST00000488905	TMEM56-RWDD3	S4R434	201 aa		13.25	□□□□□ -0.29
HDAC6-231	ENST00000488905	DNAH11	Q96DT5	4516 aa		13.25	□□□□□ -0.29
HDAC6-231	ENST00000488905	RYR1	P21817	5038 aa		13.24	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms