RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 KNCNA6PVL3 124 aa15.74■□□□□ 0.11
USP40-215ENST00000484528 IGLC1P0CG04 106 aa15.74■□□□□ 0.11
USP40-215ENST00000484528 PRSS54Q6PEW0 395 aa15.74■□□□□ 0.11
USP40-215ENST00000484528 C11orf45Q8TAV5 145 aa15.74■□□□□ 0.11
USP40-215ENST00000484528 TMEM170AQ8WVE7 144 aa15.74■□□□□ 0.11
USP40-215ENST00000484528 NARS2Q96I59 477 aaKnown RBP15.74■□□□□ 0.11
USP40-215ENST00000484528 TRAV30A0A087WSZ9 112 aa15.73■□□□□ 0.11
USP40-215ENST00000484528 C2orf83Q53S99 150 aa15.73■□□□□ 0.11
USP40-215ENST00000484528 RPP25LQ8N5L8 163 aaKnown RBP15.73■□□□□ 0.11
USP40-215ENST00000484528 PRRT1Q99946 306 aa15.73■□□□□ 0.11
USP40-215ENST00000484528 CTDSPLO15194 276 aa15.72■□□□□ 0.11
USP40-215ENST00000484528 DEDDO75618 318 aa15.72■□□□□ 0.11
USP40-215ENST00000484528 OR10J1P30954 320 aa15.72■□□□□ 0.11
USP40-215ENST00000484528 OR1S2Q8NGQ3 325 aa15.72■□□□□ 0.11
USP40-215ENST00000484528 DYNC2LI1Q8TCX1 351 aa15.72■□□□□ 0.11
USP40-215ENST00000484528 GRAMD2BQ96HH9 432 aa15.72■□□□□ 0.11
USP40-215ENST00000484528 CCDC59Q9P031 241 aaKnown RBP15.72■□□□□ 0.11
USP40-215ENST00000484528 TMEM56-RWDD3S4R434 201 aa15.72■□□□□ 0.11
USP40-215ENST00000484528 ANKRD20A5PA0PJZ0 165 aa15.71■□□□□ 0.11
USP40-215ENST00000484528 NPY1RP25929 384 aa15.71■□□□□ 0.11
USP40-215ENST00000484528 TRPT1Q86TN4 253 aaKnown RBP15.71■□□□□ 0.11
USP40-215ENST00000484528 RNASEH2CQ8TDP1 164 aaKnown RBP15.71■□□□□ 0.11
USP40-215ENST00000484528 DCANP1Q8TF63 244 aa15.71■□□□□ 0.11
USP40-215ENST00000484528 Q8WTZ3 238 aa15.71■□□□□ 0.11
USP40-215ENST00000484528 ACY3Q96HD9 319 aa15.71■□□□□ 0.11
USP40-215ENST00000484528 MFFQ9GZY8 342 aa15.71■□□□□ 0.11
USP40-215ENST00000484528 HNRNPCP07910 306 aaKnown RBP eCLIP15.7■□□□□ 0.1
USP40-215ENST00000484528 GIG44P09565 113 aaPredicted RBP15.7■□□□□ 0.1
USP40-215ENST00000484528 SULT1A3P0DMM9 295 aa15.7■□□□□ 0.1
USP40-215ENST00000484528 SULT1A4P0DMN0 295 aa15.7■□□□□ 0.1
USP40-215ENST00000484528 SLC25A4P12235 298 aa15.7■□□□□ 0.1
USP40-215ENST00000484528 C4BPBP20851 252 aa15.7■□□□□ 0.1
USP40-215ENST00000484528 DHRS2Q13268 280 aa15.7■□□□□ 0.1
USP40-215ENST00000484528 USF2Q15853 346 aaPredicted RBP15.7■□□□□ 0.1
USP40-215ENST00000484528 ACTL10Q5JWF8 245 aa15.7■□□□□ 0.1
USP40-215ENST00000484528 RAB2BQ8WUD1 216 aa15.7■□□□□ 0.1
USP40-215ENST00000484528 U3KQE9 123 aa15.7■□□□□ 0.1
USP40-215ENST00000484528 IL4P05112 153 aa15.69■□□□□ 0.1
USP40-215ENST00000484528 GLMPQ8WWB7 406 aa15.69■□□□□ 0.1
USP40-215ENST00000484528 NPIPB3Q92617 1050 aa15.69■□□□□ 0.1
USP40-215ENST00000484528 MCUBQ9NWR8 336 aa15.69■□□□□ 0.1
USP40-215ENST00000484528 HELTA6NFD8 242 aa15.68■□□□□ 0.1
USP40-215ENST00000484528 IFNA10P01566 189 aa15.68■□□□□ 0.1
USP40-215ENST00000484528 IFNA4P05014 189 aa15.68■□□□□ 0.1
USP40-215ENST00000484528 AKR1C4P17516 323 aa15.68■□□□□ 0.1
USP40-215ENST00000484528 YPEL3P61236 119 aaPredicted RBP15.68■□□□□ 0.1
USP40-215ENST00000484528 PSMG4Q5JS54 123 aa15.68■□□□□ 0.1
USP40-215ENST00000484528 C16orf54Q6UWD8 224 aa15.68■□□□□ 0.1
USP40-215ENST00000484528 Q8NAQ8 132 aa15.68■□□□□ 0.1
USP40-215ENST00000484528 CLEC5AQ9NY25 188 aa15.68■□□□□ 0.1
USP40-215ENST00000484528 SCP2D1Q9UJQ7 156 aa15.68■□□□□ 0.1
USP40-215ENST00000484528 KCNIP3Q9Y2W7 256 aa15.68■□□□□ 0.1
USP40-215ENST00000484528 KMT2AQ03164 3969 aa15.68■□□□□ 0.1
USP40-215ENST00000484528 FRAS1Q86XX4 4008 aa15.67■□□□□ 0.1
USP40-215ENST00000484528 IGHV4-28A0A0C4DH34 117 aa15.67■□□□□ 0.1
USP40-215ENST00000484528 GSTZ1O43708 216 aaPredicted RBP15.67■□□□□ 0.1
USP40-215ENST00000484528 EIF2B2P49770 351 aaKnown RBP15.67■□□□□ 0.1
USP40-215ENST00000484528 NMSQ5H8A3 153 aa15.67■□□□□ 0.1
USP40-215ENST00000484528 ETFRF1Q6IPR1 90 aa15.67■□□□□ 0.1
USP40-215ENST00000484528 LYZL2Q7Z4W2 148 aa15.67■□□□□ 0.1
USP40-215ENST00000484528 IL22RA2Q969J5 263 aa15.67■□□□□ 0.1
USP40-215ENST00000484528 RABL2AQ9UBK7 228 aaPredicted RBP15.67■□□□□ 0.1
USP40-215ENST00000484528 RABL2BQ9UNT1 228 aa15.67■□□□□ 0.1
USP40-215ENST00000484528 RBMY1A1P0DJD3 496 aaKnown RBP15.66■□□□□ 0.1
USP40-215ENST00000484528 RBMY1CP0DJD4 496 aa15.66■□□□□ 0.1
USP40-215ENST00000484528 SPP1P10451 314 aa15.66■□□□□ 0.1
USP40-215ENST00000484528 TMBIM6P55061 237 aa15.66■□□□□ 0.1
USP40-215ENST00000484528 SUPT4H1P63272 117 aaKnown RBP15.66■□□□□ 0.1
USP40-215ENST00000484528 RBMY1FQ15415 496 aaKnown RBP15.66■□□□□ 0.1
USP40-215ENST00000484528 LGALS9CQ6DKI2 356 aa15.66■□□□□ 0.1
USP40-215ENST00000484528 MORN3Q6PF18 240 aaPredicted RBP15.66■□□□□ 0.1
USP40-215ENST00000484528 RBKSQ9H477 322 aa15.66■□□□□ 0.1
USP40-215ENST00000484528 TNFSF8P32971 234 aa15.65■□□□□ 0.1
USP40-215ENST00000484528 SMCO1Q147U7 214 aa15.65■□□□□ 0.1
USP40-215ENST00000484528 DTD1Q8TEA8 209 aa15.65■□□□□ 0.1
USP40-215ENST00000484528 SLIRPQ9GZT3 109 aaKnown RBP15.65■□□□□ 0.1
USP40-215ENST00000484528 HSPB7Q9UBY9 170 aa15.65■□□□□ 0.1
USP40-215ENST00000484528 RSL24D1Q9UHA3 163 aaKnown RBP15.65■□□□□ 0.1
USP40-215ENST00000484528 A0A0B4J2A0 478 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 H3BMQ9 156 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 TOMM40O96008 361 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 RD3LP0DJH9 198 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 PSG1P11464 419 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 CCR6P51684 374 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 NOXA1Q86UR1 476 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 LGI3Q8N145 548 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 OR51G1Q8NGK1 321 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 C2CD4CQ8TF44 421 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 SCGB3A2Q96PL1 93 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 RAB40CQ96S21 281 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 BCL7BQ9BQE9 202 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 SHPKQ9UHJ6 478 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 X6R8D5 127 aa15.64■□□□□ 0.09
USP40-215ENST00000484528 FABP12A6NFH5 140 aa15.63■□□□□ 0.09
USP40-215ENST00000484528 FAM90A26D6RGX4 464 aa15.63■□□□□ 0.09
USP40-215ENST00000484528 NOL3O60936 208 aaKnown RBP15.63■□□□□ 0.09
USP40-215ENST00000484528 TMEM41BQ5BJD5 291 aa15.63■□□□□ 0.09
USP40-215ENST00000484528 SIGLEC15Q6ZMC9 328 aa15.63■□□□□ 0.09
USP40-215ENST00000484528 PBDC1Q9BVG4 233 aa15.63■□□□□ 0.09
USP40-215ENST00000484528 BUB3O43684 328 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms