RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 VPS25Q9BRG1 176 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 SPTBN4Q9H254 2564 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 SYS1-DBNDD2H3BUS1 97 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 TAX1BP3O14907 124 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 HBBP68871 147 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 CD69Q07108 199 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 VWA1Q6PCB0 445 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 ZNF329Q86UD4 541 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 ST6GALNAC6Q969X2 333 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 TMEM191AQ9H0A3 160 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 CST9LQ9H4G1 147 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 SPRR3Q9UBC9 169 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 FRYLO94915 3013 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 NUDT3O95989 172 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 FAM120AOSQ5T036 256 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 BVES-AS1Q5T3Y7 98 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 ASPHD1Q5U4P2 390 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 Q6ZT83 130 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 DEFB125Q8N687 156 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 PAXXQ9BUH6 204 aa10.81□□□□□ -0.68
USP40-214ENST00000483519 TRAV5A0A0B4J249 113 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 PSMB11A5LHX3 300 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 M0QZ24 198 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 COX7A2P2O60397 106 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 LDLRAD2Q5SZI1 272 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 OR1L4Q8NGR5 311 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 CACNG8Q8WXS5 425 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 SMIM12Q96EX1 92 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 SOX21Q9Y651 276 aaPredicted RBP10.8□□□□□ -0.68
USP40-214ENST00000483519 AGFG2O95081 481 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 LEPROTL1O95214 131 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 RNASE2P10153 161 aaKnown RBP10.8□□□□□ -0.68
USP40-214ENST00000483519 OCIAD2Q56VL3 154 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 MORN5Q5VZ52 161 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 MBNL2Q5VZF2 373 aaKnown RBP10.8□□□□□ -0.68
USP40-214ENST00000483519 ZNRF1Q8ND25 227 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 MDS2Q8NDY4 140 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 OR2Z1Q8NG97 314 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 URB1-AS1Q96HZ7 61 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 DMDP11532 3685 aa10.8□□□□□ -0.68
USP40-214ENST00000483519 TEX50A0A1B0GTY4 177 aa10.79□□□□□ -0.68
USP40-214ENST00000483519 IGHV3OR15-7A0A075B7D8 119 aa10.79□□□□□ -0.68
USP40-214ENST00000483519 IGHV1-24A0A0C4DH33 117 aa10.79□□□□□ -0.68
USP40-214ENST00000483519 PYYP10082 97 aa10.79□□□□□ -0.68
USP40-214ENST00000483519 C17orf58Q2M2W7 97 aa10.79□□□□□ -0.68
USP40-214ENST00000483519 C10orf113Q5VZT2 155 aa10.79□□□□□ -0.68
USP40-214ENST00000483519 SSX8Q7RTT4 187 aa10.79□□□□□ -0.68
USP40-214ENST00000483519 C7orf69Q9H7B7 122 aa10.79□□□□□ -0.68
USP40-214ENST00000483519 KBTBD11-OT1A0A1B0GTJ5 212 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 hDV102S1A0JD36 115 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 CBY3A6NI87 242 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 HLA-DRB1P01911 266 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 CECR9P0C854 216 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 CGB3P0DN86 165 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 CGB7P0DN87 165 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 SPTBN2O15020 2390 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 OR5AL1P0C617 328 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 PSG1P11464 419 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 CFHR2P36980 270 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 MLANAQ16655 118 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 UTF1Q5T230 341 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 ERASQ7Z444 233 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 WFDC12Q8WWY7 111 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 MUC21A0A0G2JKD1 596 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 MUC21A0A140T8X8 626 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 A0A1W2PNU3 283 aaPredicted RBP10.78□□□□□ -0.68
USP40-214ENST00000483519 OR2T8A6NH00 312 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 SH2D7A6NKC9 451 aaPredicted RBP10.78□□□□□ -0.68
USP40-214ENST00000483519 CORTO00230 105 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 LIPFP07098 398 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 MUC21Q5SSG8 566 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 C1orf162Q8NEQ5 155 aaPredicted RBP10.78□□□□□ -0.68
USP40-214ENST00000483519 MAP1LC3CQ9BXW4 147 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 MS4A6AQ9H2W1 248 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 RPP21Q9H633 154 aaKnown RBP10.78□□□□□ -0.68
USP40-214ENST00000483519 TP73-AS1Q9UF72 201 aa10.78□□□□□ -0.68
USP40-214ENST00000483519 A8MWL6 223 aa10.77□□□□□ -0.69
USP40-214ENST00000483519 CT83Q5H943 113 aa10.77□□□□□ -0.69
USP40-214ENST00000483519 PET117Q6UWS5 81 aa10.77□□□□□ -0.69
USP40-214ENST00000483519 SCRT2Q9NQ03 307 aa10.77□□□□□ -0.69
USP40-214ENST00000483519 DKK4Q9UBT3 224 aa10.77□□□□□ -0.69
USP40-214ENST00000483519 VWC2LB2RUY7 222 aa10.77□□□□□ -0.69
USP40-214ENST00000483519 C9orf172C9J069 976 aa10.77□□□□□ -0.69
USP40-214ENST00000483519 CD5LO43866 347 aa10.77□□□□□ -0.69
USP40-214ENST00000483519 FOXA3P55318 350 aaPredicted RBP10.77□□□□□ -0.69
USP40-214ENST00000483519 ERHP84090 104 aaKnown RBP10.77□□□□□ -0.69
USP40-214ENST00000483519 HIST1H1AQ02539 215 aaPredicted RBP10.77□□□□□ -0.69
USP40-214ENST00000483519 ZNF430Q9H8G1 570 aaPredicted RBP10.77□□□□□ -0.69
USP40-214ENST00000483519 K7ERU9 68 aa10.76□□□□□ -0.69
USP40-214ENST00000483519 AMMECR1LQ6DCA0 310 aa10.76□□□□□ -0.69
USP40-214ENST00000483519 TCF24Q7RTU0 167 aa10.76□□□□□ -0.69
USP40-214ENST00000483519 PDPNQ86YL7 162 aa10.76□□□□□ -0.69
USP40-214ENST00000483519 CNEP1R1Q8N9A8 125 aa10.76□□□□□ -0.69
USP40-214ENST00000483519 FXYD5Q96DB9 178 aa10.76□□□□□ -0.69
USP40-214ENST00000483519 GPR82Q96P67 336 aa10.76□□□□□ -0.69
USP40-214ENST00000483519 FREM2Q5SZK8 3169 aa10.76□□□□□ -0.69
USP40-214ENST00000483519 IGKV1-16P04430 117 aa10.76□□□□□ -0.69
USP40-214ENST00000483519 SAA1P0DJI8 122 aaPredicted RBP10.76□□□□□ -0.69
USP40-214ENST00000483519 STXBP6Q8NFX7 210 aa10.76□□□□□ -0.69
USP40-214ENST00000483519 PEF1Q9UBV8 284 aaKnown RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms