RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 LYRM2Q9NU23 88 aaPredicted RBP2.12□□□□□ -2.07
UPF3B-203ENST00000478840 GBF1Q92538 1859 aa2.11□□□□□ -2.07
UPF3B-203ENST00000478840 F8W036 122 aa2.11□□□□□ -2.07
UPF3B-203ENST00000478840 AIPO00170 330 aa2.11□□□□□ -2.07
UPF3B-203ENST00000478840 CRYGAP11844 174 aa2.11□□□□□ -2.07
UPF3B-203ENST00000478840 RNASE4P34096 147 aaKnown RBP2.11□□□□□ -2.07
UPF3B-203ENST00000478840 CRYBA4P53673 196 aa2.11□□□□□ -2.07
UPF3B-203ENST00000478840 KRTAP12-1P59990 96 aa2.11□□□□□ -2.07
UPF3B-203ENST00000478840 RHOBP62745 196 aa2.11□□□□□ -2.07
UPF3B-203ENST00000478840 RHEBQ15382 184 aa2.11□□□□□ -2.07
UPF3B-203ENST00000478840 Q1T7F1 81 aa2.11□□□□□ -2.07
UPF3B-203ENST00000478840 WFDC11Q8NEX6 87 aa2.11□□□□□ -2.07
UPF3B-203ENST00000478840 MBD3L1Q8WWY6 194 aa2.11□□□□□ -2.07
UPF3B-203ENST00000478840 CST9LQ9H4G1 147 aa2.11□□□□□ -2.07
UPF3B-203ENST00000478840 C1orf196B1AJZ1 125 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 G3V2T6 193 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 H7C1C5 153 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 NDUFC2O95298 119 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 IFI30P13284 250 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 GPX2P18283 190 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 PHBP35232 272 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 PSMD8P48556 350 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 TAS2R41P59536 307 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 KRTAP12-3P60328 96 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 B2MP61769 119 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 LCN6P62502 163 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 GNG5P63218 68 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 ELOBQ15370 118 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 EXOC3-AS1Q8N2X6 119 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 SMIM20Q8N5G0 67 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 OR4E2Q8NGC2 313 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 HIST1H2BLQ99880 126 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 UFC1Q9Y3C8 167 aa2.1□□□□□ -2.07
UPF3B-203ENST00000478840 COL5A3P25940 1745 aaPredicted RBP2.09□□□□□ -2.07
UPF3B-203ENST00000478840 C7orf71A4D174 169 aa2.09□□□□□ -2.07
UPF3B-203ENST00000478840 AKR1C3P42330 323 aa2.09□□□□□ -2.07
UPF3B-203ENST00000478840 TSNQ15631 228 aaKnown RBP2.09□□□□□ -2.07
UPF3B-203ENST00000478840 TRIQKQ629K1 86 aa2.09□□□□□ -2.07
UPF3B-203ENST00000478840 COA5Q86WW8 74 aa2.09□□□□□ -2.07
UPF3B-203ENST00000478840 SERPINI1Q99574 410 aa2.09□□□□□ -2.07
UPF3B-203ENST00000478840 BIN3Q9NQY0 253 aa2.09□□□□□ -2.07
UPF3B-203ENST00000478840 ACER3Q9NUN7 267 aa2.09□□□□□ -2.07
UPF3B-203ENST00000478840 NHP2Q9NX24 153 aaKnown RBP2.09□□□□□ -2.07
UPF3B-203ENST00000478840 MED29Q9NX70 200 aa2.09□□□□□ -2.07
UPF3B-203ENST00000478840 V9GYQ6 96 aa2.09□□□□□ -2.07
UPF3B-203ENST00000478840 SYNMO15061 1565 aa2.09□□□□□ -2.08
UPF3B-203ENST00000478840 PCNX2A6NKB5 2137 aa2.09□□□□□ -2.08
UPF3B-203ENST00000478840 DENND4CQ5VZ89 1909 aa2.09□□□□□ -2.08
UPF3B-203ENST00000478840 IGKV1D-42A0A075B6H8 117 aa2.08□□□□□ -2.08
UPF3B-203ENST00000478840 OVOL1O14753 267 aa2.08□□□□□ -2.08
UPF3B-203ENST00000478840 MFSD11O43934 449 aa2.08□□□□□ -2.08
UPF3B-203ENST00000478840 FABP1P07148 127 aa2.08□□□□□ -2.08
UPF3B-203ENST00000478840 TCTAP57738 103 aa2.08□□□□□ -2.08
UPF3B-203ENST00000478840 GRINAQ7Z429 371 aa2.08□□□□□ -2.08
UPF3B-203ENST00000478840 OR13D1Q8NGV5 346 aa2.08□□□□□ -2.08
UPF3B-203ENST00000478840 LYSMD1Q96S90 227 aa2.08□□□□□ -2.08
UPF3B-203ENST00000478840 PBOV1Q9GZY1 135 aa2.08□□□□□ -2.08
UPF3B-203ENST00000478840 SS18L2Q9UHA2 77 aa2.08□□□□□ -2.08
UPF3B-203ENST00000478840 SSR3Q9UNL2 185 aa2.08□□□□□ -2.08
UPF3B-203ENST00000478840 UNC13AQ9UPW8 1703 aa2.08□□□□□ -2.08
UPF3B-203ENST00000478840 FN1P02751 2386 aaKnown RBP2.07□□□□□ -2.08
UPF3B-203ENST00000478840 GPX1P07203 203 aa2.07□□□□□ -2.08
UPF3B-203ENST00000478840 ZNF705BP0CI00 300 aaPredicted RBP2.07□□□□□ -2.08
UPF3B-203ENST00000478840 MIFP14174 115 aa2.07□□□□□ -2.08
UPF3B-203ENST00000478840 FKBP2P26885 142 aaKnown RBP2.07□□□□□ -2.08
UPF3B-203ENST00000478840 SRP14P37108 136 aaKnown RBP2.07□□□□□ -2.08
UPF3B-203ENST00000478840 EIF5AP63241 154 aaKnown RBP2.07□□□□□ -2.08
UPF3B-203ENST00000478840 ZNF846Q147U1 533 aa2.07□□□□□ -2.08
UPF3B-203ENST00000478840 SCGB2B2Q4G0G5 96 aa2.07□□□□□ -2.08
UPF3B-203ENST00000478840 SPANXN5Q5MJ07 72 aa2.07□□□□□ -2.08
UPF3B-203ENST00000478840 C3orf33Q6P1S2 294 aa2.07□□□□□ -2.08
UPF3B-203ENST00000478840 STAG3L4Q8TBR4 150 aa2.07□□□□□ -2.08
UPF3B-203ENST00000478840 CENPHQ9H3R5 247 aa2.07□□□□□ -2.08
UPF3B-203ENST00000478840 TRABDQ9H4I3 376 aa2.07□□□□□ -2.08
UPF3B-203ENST00000478840 SMPXQ9UHP9 88 aa2.07□□□□□ -2.08
UPF3B-203ENST00000478840 ARHGEF28Q8N1W1 1705 aaKnown RBP2.07□□□□□ -2.08
UPF3B-203ENST00000478840 SBF1O95248 1867 aa2.07□□□□□ -2.08
UPF3B-203ENST00000478840 UBR2Q8IWV8 1755 aa2.06□□□□□ -2.08
UPF3B-203ENST00000478840 FUOMA2VDF0 154 aa2.06□□□□□ -2.08
UPF3B-203ENST00000478840 PPP5D1E7EU14 171 aa2.06□□□□□ -2.08
UPF3B-203ENST00000478840 M0R378 163 aa2.06□□□□□ -2.08
UPF3B-203ENST00000478840 TAX1BP3O14907 124 aa2.06□□□□□ -2.08
UPF3B-203ENST00000478840 OR2T1O43869 369 aa2.06□□□□□ -2.08
UPF3B-203ENST00000478840 AQP3Q92482 292 aa2.06□□□□□ -2.08
UPF3B-203ENST00000478840 YPEL2Q96QA6 119 aa2.06□□□□□ -2.08
UPF3B-203ENST00000478840 TMEM70Q9BUB7 260 aa2.06□□□□□ -2.08
UPF3B-203ENST00000478840 TMEM126AQ9H061 195 aa2.06□□□□□ -2.08
UPF3B-203ENST00000478840 TAS2R4Q9NYW5 299 aa2.06□□□□□ -2.08
UPF3B-203ENST00000478840 ATPIF1Q9UII2 106 aa2.06□□□□□ -2.08
UPF3B-203ENST00000478840 MYH7BA7E2Y1 1941 aa2.06□□□□□ -2.08
UPF3B-203ENST00000478840 YTHDC2Q9H6S0 1430 aaKnown RBP2.06□□□□□ -2.08
UPF3B-203ENST00000478840 DUXBA0A1W2PPF3 345 aa2.05□□□□□ -2.08
UPF3B-203ENST00000478840 PGRMC1O00264 195 aaKnown RBP2.05□□□□□ -2.08
UPF3B-203ENST00000478840 BAALC-AS2P0C853 105 aa2.05□□□□□ -2.08
UPF3B-203ENST00000478840 SERPINB1P30740 379 aa2.05□□□□□ -2.08
UPF3B-203ENST00000478840 C22orf39Q6P5X5 142 aa2.05□□□□□ -2.08
UPF3B-203ENST00000478840 CANT1Q8WVQ1 401 aa2.05□□□□□ -2.08
UPF3B-203ENST00000478840 ZHX1-C8orf76Q96EF9 292 aa2.05□□□□□ -2.08
UPF3B-203ENST00000478840 MALSU1Q96EH3 234 aa2.05□□□□□ -2.08
UPF3B-203ENST00000478840 ZNF625Q96I27 306 aaPredicted RBP2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms