RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 TNFRSF9Q07011 255 aa8.91□□□□□ -0.98
SYNE1-223ENST00000476519 KLF9Q13886 244 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-223ENST00000476519 PYDC2Q56P42 97 aa8.91□□□□□ -0.98
SYNE1-223ENST00000476519 PRSS54Q6PEW0 395 aa8.91□□□□□ -0.98
SYNE1-223ENST00000476519 APRG1Q8IVJ8 170 aa8.91□□□□□ -0.98
SYNE1-223ENST00000476519 OR1S2Q8NGQ3 325 aa8.91□□□□□ -0.98
SYNE1-223ENST00000476519 Q8WTZ3 238 aa8.91□□□□□ -0.98
SYNE1-223ENST00000476519 NARS2Q96I59 477 aaKnown RBP8.91□□□□□ -0.98
SYNE1-223ENST00000476519 SLC25A21Q9BQT8 299 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-223ENST00000476519 CSTL1Q9H114 145 aa8.91□□□□□ -0.98
SYNE1-223ENST00000476519 MS4A6AQ9H2W1 248 aa8.91□□□□□ -0.98
SYNE1-223ENST00000476519 IGKV3-7A0A075B6H7 116 aa8.9□□□□□ -0.98
SYNE1-223ENST00000476519 MPTX1A8MV57 137 aa8.9□□□□□ -0.98
SYNE1-223ENST00000476519 ZNF701M0R085 212 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-223ENST00000476519 YPEL3P61236 119 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-223ENST00000476519 SMCO1Q147U7 214 aa8.9□□□□□ -0.98
SYNE1-223ENST00000476519 TIGITQ495A1 244 aa8.9□□□□□ -0.98
SYNE1-223ENST00000476519 TMEM128Q5BJH2 165 aa8.9□□□□□ -0.98
SYNE1-223ENST00000476519 LYZL2Q7Z4W2 148 aa8.9□□□□□ -0.98
SYNE1-223ENST00000476519 TOMM5Q8N4H5 51 aa8.9□□□□□ -0.98
SYNE1-223ENST00000476519 GBGT1Q8N5D6 347 aa8.9□□□□□ -0.98
SYNE1-223ENST00000476519 HSPB7Q9UBY9 170 aa8.9□□□□□ -0.98
SYNE1-223ENST00000476519 IGHV3-66A0A0C4DH42 116 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 DUXBA0A1W2PPF3 345 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 CCDC160A6NGH7 325 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 IGLC1P0CG04 106 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 NPY1RP25929 384 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 OR10J1P30954 320 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 EIF2B2P49770 351 aaKnown RBP8.89□□□□□ -0.99
SYNE1-223ENST00000476519 RND2P52198 227 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 AP2S1P53680 142 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-223ENST00000476519 DEFB135Q30KP9 77 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 TMEM217Q8N7C4 229 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 GATAD1Q8WUU5 269 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 TMEM170AQ8WVE7 144 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 TRIM63Q969Q1 353 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 GRAMD2BQ96HH9 432 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 U3KQE9 123 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 V9GYH0 126 aa8.89□□□□□ -0.99
SYNE1-223ENST00000476519 JTBO76095 146 aa8.88□□□□□ -0.99
SYNE1-223ENST00000476519 IFNA10P01566 189 aa8.88□□□□□ -0.99
SYNE1-223ENST00000476519 GPX4P36969 197 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-223ENST00000476519 P2RY1P47900 373 aa8.88□□□□□ -0.99
SYNE1-223ENST00000476519 LYG2Q86SG7 212 aa8.88□□□□□ -0.99
SYNE1-223ENST00000476519 CCDC190Q86UF4 302 aa8.88□□□□□ -0.99
SYNE1-223ENST00000476519 LRTM2Q8N967 370 aa8.88□□□□□ -0.99
SYNE1-223ENST00000476519 DTD1Q8TEA8 209 aa8.88□□□□□ -0.99
SYNE1-223ENST00000476519 NPIPB3Q92617 1050 aa8.88□□□□□ -0.99
SYNE1-223ENST00000476519 PRR13Q9NZ81 148 aa8.88□□□□□ -0.99
SYNE1-223ENST00000476519 A0A0J9YWU9 116 aa8.87□□□□□ -0.99
SYNE1-223ENST00000476519 HELTA6NFD8 242 aa8.87□□□□□ -0.99
SYNE1-223ENST00000476519 PITX3O75364 302 aa8.87□□□□□ -0.99
SYNE1-223ENST00000476519 RD3LP0DJH9 198 aa8.87□□□□□ -0.99
SYNE1-223ENST00000476519 SLC25A6P12236 298 aa8.87□□□□□ -0.99
SYNE1-223ENST00000476519 DEFB131AP59861 70 aa8.87□□□□□ -0.99
SYNE1-223ENST00000476519 ZNF79Q15937 498 aa8.87□□□□□ -0.99
SYNE1-223ENST00000476519 ZNF124Q15973 351 aa8.87□□□□□ -0.99
SYNE1-223ENST00000476519 SPANXN2Q5MJ10 180 aa8.87□□□□□ -0.99
SYNE1-223ENST00000476519 TMED4Q7Z7H5 227 aa8.87□□□□□ -0.99
SYNE1-223ENST00000476519 OR1S1Q8NH92 325 aa8.87□□□□□ -0.99
SYNE1-223ENST00000476519 RBM38Q9H0Z9 239 aaKnown RBP8.87□□□□□ -0.99
SYNE1-223ENST00000476519 RBKSQ9H477 322 aa8.87□□□□□ -0.99
SYNE1-223ENST00000476519 RABAC1Q9UI14 185 aa8.87□□□□□ -0.99
SYNE1-223ENST00000476519 FAM90A26D6RGX4 464 aa8.86□□□□□ -0.99
SYNE1-223ENST00000476519 K7EQG2 157 aa8.86□□□□□ -0.99
SYNE1-223ENST00000476519 IFNA4P05014 189 aa8.86□□□□□ -0.99
SYNE1-223ENST00000476519 HNRNPCP07910 306 aaKnown RBP eCLIP8.86□□□□□ -0.99
SYNE1-223ENST00000476519 RBMS2Q15434 407 aaKnown RBP8.86□□□□□ -0.99
SYNE1-223ENST00000476519 C16orf54Q6UWD8 224 aa8.86□□□□□ -0.99
SYNE1-223ENST00000476519 ACY3Q96HD9 319 aa8.86□□□□□ -0.99
SYNE1-223ENST00000476519 SEPSECSQ9HD40 501 aaKnown RBP8.86□□□□□ -0.99
SYNE1-223ENST00000476519 PFDN2Q9UHV9 154 aa8.86□□□□□ -0.99
SYNE1-223ENST00000476519 TMED3Q9Y3Q3 217 aa8.86□□□□□ -0.99
SYNE1-223ENST00000476519 CXorf65A6NEN9 183 aa8.85□□□□□ -0.99
SYNE1-223ENST00000476519 MED6O75586 246 aa8.85□□□□□ -0.99
SYNE1-223ENST00000476519 NXPH3O95157 252 aa8.85□□□□□ -0.99
SYNE1-223ENST00000476519 SFT2D2O95562 160 aa8.85□□□□□ -0.99
SYNE1-223ENST00000476519 TOMM40O96008 361 aa8.85□□□□□ -0.99
SYNE1-223ENST00000476519 VAMP1P23763 118 aa8.85□□□□□ -0.99
SYNE1-223ENST00000476519 UBE2MP61081 183 aaKnown RBP8.85□□□□□ -0.99
SYNE1-223ENST00000476519 TMEM41BQ5BJD5 291 aa8.85□□□□□ -0.99
SYNE1-223ENST00000476519 STHQ8IWL8 128 aa8.85□□□□□ -0.99
SYNE1-223ENST00000476519 STXBP6Q8NFX7 210 aa8.85□□□□□ -0.99
SYNE1-223ENST00000476519 DCANP1Q8TF63 244 aa8.85□□□□□ -0.99
SYNE1-223ENST00000476519 RARRES2Q99969 163 aa8.85□□□□□ -0.99
SYNE1-223ENST00000476519 NUPR2A6NF83 97 aa8.84□□□□□ -0.99
SYNE1-223ENST00000476519 NAP1L6A6NFF2 107 aa8.84□□□□□ -0.99
SYNE1-223ENST00000476519 BUB3O43684 328 aa8.84□□□□□ -0.99
SYNE1-223ENST00000476519 IL4P05112 153 aa8.84□□□□□ -0.99
SYNE1-223ENST00000476519 FABP1P07148 127 aa8.84□□□□□ -0.99
SYNE1-223ENST00000476519 PSG1P11464 419 aa8.84□□□□□ -0.99
SYNE1-223ENST00000476519 NUP62P37198 522 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-223ENST00000476519 RAB11AP62491 216 aa8.84□□□□□ -0.99
SYNE1-223ENST00000476519 RPP30P78346 268 aaKnown RBP8.84□□□□□ -0.99
SYNE1-223ENST00000476519 GAMTQ14353 236 aa8.84□□□□□ -0.99
SYNE1-223ENST00000476519 LEMD1Q68G75 181 aa8.84□□□□□ -0.99
SYNE1-223ENST00000476519 CEMP1Q6PRD7 247 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-223ENST00000476519 FAM24BQ8N5W8 94 aa8.84□□□□□ -0.99
SYNE1-223ENST00000476519 OR51G1Q8NGK1 321 aa8.84□□□□□ -0.99
SYNE1-223ENST00000476519 OR11H2Q8NH07 326 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms