RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 TIGITQ495A1 244 aa10.68□□□□□ -0.7
VAMP4-203ENST00000474047 PRSS54Q6PEW0 395 aa10.68□□□□□ -0.7
VAMP4-203ENST00000474047 DEFB125Q8N687 156 aa10.68□□□□□ -0.7
VAMP4-203ENST00000474047 OR1S2Q8NGQ3 325 aa10.68□□□□□ -0.7
VAMP4-203ENST00000474047 NARS2Q96I59 477 aaKnown RBP10.68□□□□□ -0.7
VAMP4-203ENST00000474047 SPAG8Q99932 426 aaPredicted RBP10.68□□□□□ -0.7
VAMP4-203ENST00000474047 SRD5A3Q9H8P0 318 aa10.68□□□□□ -0.7
VAMP4-203ENST00000474047 FAM240BA0A1B0GVZ2 78 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 CHEK1O14757 476 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 TSPAN4O14817 238 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 SYNGR2O43760 224 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 NPPCP23582 126 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 OR10J1P30954 320 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 Q8WTZ3 238 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 NPIPB3Q92617 1050 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 METTL26Q96S19 204 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 OR4C46A6NHA9 309 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 RPL11P62913 178 aaKnown RBP10.67□□□□□ -0.7
VAMP4-203ENST00000474047 TMEM170AQ8WVE7 144 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 SLC35E1Q96K37 410 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 RNF2Q99496 336 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 TMEM231Q9H6L2 316 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 NUDT15Q9NV35 164 aa10.67□□□□□ -0.7
VAMP4-203ENST00000474047 IGKV3-7A0A075B6H7 116 aa10.66□□□□□ -0.7
VAMP4-203ENST00000474047 A0A1W2PS18 150 aa10.66□□□□□ -0.7
VAMP4-203ENST00000474047 CD5P06127 495 aa10.66□□□□□ -0.7
VAMP4-203ENST00000474047 PAFAH1B2P68402 229 aa10.66□□□□□ -0.7
VAMP4-203ENST00000474047 WFDC10AQ9H1F0 79 aa10.66□□□□□ -0.7
VAMP4-203ENST00000474047 IGHV3-66A0A0C4DH42 116 aa10.65□□□□□ -0.7
VAMP4-203ENST00000474047 IGKV1-17P01599 117 aa10.65□□□□□ -0.7
VAMP4-203ENST00000474047 H2AFB2P0C5Z0 115 aa10.65□□□□□ -0.7
VAMP4-203ENST00000474047 IGLC1P0CG04 106 aa10.65□□□□□ -0.7
VAMP4-203ENST00000474047 GPX4P36969 197 aaPredicted RBP10.65□□□□□ -0.7
VAMP4-203ENST00000474047 NKX2-1P43699 371 aaPredicted RBP10.65□□□□□ -0.7
VAMP4-203ENST00000474047 TFPI2P48307 235 aa10.65□□□□□ -0.7
VAMP4-203ENST00000474047 HAGHQ16775 308 aa10.65□□□□□ -0.7
VAMP4-203ENST00000474047 SPANXN5Q5MJ07 72 aa10.65□□□□□ -0.7
VAMP4-203ENST00000474047 MITD1Q8WV92 249 aa10.65□□□□□ -0.7
VAMP4-203ENST00000474047 ZNF414Q96IQ9 312 aa10.65□□□□□ -0.7
VAMP4-203ENST00000474047 WWC2-AS2Q96NR7 200 aa10.65□□□□□ -0.7
VAMP4-203ENST00000474047 RCHY1Q96PM5 261 aa10.65□□□□□ -0.7
VAMP4-203ENST00000474047 ZFAND3Q9H8U3 227 aa10.65□□□□□ -0.7
VAMP4-203ENST00000474047 GSKIPQ9P0R6 139 aa10.65□□□□□ -0.7
VAMP4-203ENST00000474047 ZFP92A6NM28 416 aa10.64□□□□□ -0.71
VAMP4-203ENST00000474047 SCGB1D2O95969 90 aa10.64□□□□□ -0.71
VAMP4-203ENST00000474047 YPEL3P61236 119 aaPredicted RBP10.64□□□□□ -0.71
VAMP4-203ENST00000474047 IAH1Q2TAA2 248 aaPredicted RBP10.64□□□□□ -0.71
VAMP4-203ENST00000474047 TCF24Q7RTU0 167 aa10.64□□□□□ -0.71
VAMP4-203ENST00000474047 ST8SIA2Q92186 375 aa10.64□□□□□ -0.71
VAMP4-203ENST00000474047 GRAMD2BQ96HH9 432 aa10.64□□□□□ -0.71
VAMP4-203ENST00000474047 UBQLN2Q9UHD9 624 aa10.64□□□□□ -0.71
VAMP4-203ENST00000474047 STRAPQ9Y3F4 350 aaKnown RBP10.64□□□□□ -0.71
VAMP4-203ENST00000474047 MPTX1A8MV57 137 aa10.64□□□□□ -0.71
VAMP4-203ENST00000474047 DNASE2O00115 360 aaPredicted RBP10.64□□□□□ -0.71
VAMP4-203ENST00000474047 RD3LP0DJH9 198 aa10.64□□□□□ -0.71
VAMP4-203ENST00000474047 GBGT1Q8N5D6 347 aa10.64□□□□□ -0.71
VAMP4-203ENST00000474047 ENKURQ8TC29 256 aa10.64□□□□□ -0.71
VAMP4-203ENST00000474047 SPATA25Q9BR10 227 aa10.64□□□□□ -0.71
VAMP4-203ENST00000474047 FAM25EA8MYX2 175 aa10.63□□□□□ -0.71
VAMP4-203ENST00000474047 UPK1BO75841 260 aa10.63□□□□□ -0.71
VAMP4-203ENST00000474047 APOHP02749 345 aaPredicted RBP10.63□□□□□ -0.71
VAMP4-203ENST00000474047 FABP1P07148 127 aa10.63□□□□□ -0.71
VAMP4-203ENST00000474047 CMC4P56277 68 aaPredicted RBP10.63□□□□□ -0.71
VAMP4-203ENST00000474047 POLR2GP62487 172 aaKnown RBP eCLIP10.63□□□□□ -0.71
VAMP4-203ENST00000474047 ID3Q02535 119 aa10.63□□□□□ -0.71
VAMP4-203ENST00000474047 ASAH1Q13510 395 aa10.63□□□□□ -0.71
VAMP4-203ENST00000474047 GAMTQ14353 236 aa10.63□□□□□ -0.71
VAMP4-203ENST00000474047 WFDC3Q8IUB2 231 aa10.63□□□□□ -0.71
VAMP4-203ENST00000474047 VSIRQ9H7M9 311 aa10.63□□□□□ -0.71
VAMP4-203ENST00000474047 PSENENQ9NZ42 101 aa10.63□□□□□ -0.71
VAMP4-203ENST00000474047 RBMY1BA6NDE4 496 aaKnown RBP10.62□□□□□ -0.71
VAMP4-203ENST00000474047 RBMY1EA6NEQ0 496 aaKnown RBP10.62□□□□□ -0.71
VAMP4-203ENST00000474047 H3BP45 60 aa10.62□□□□□ -0.71
VAMP4-203ENST00000474047 SSSCA1O60232 199 aa10.62□□□□□ -0.71
VAMP4-203ENST00000474047 DFFBO76075 338 aa10.62□□□□□ -0.71
VAMP4-203ENST00000474047 TOMM40O96008 361 aa10.62□□□□□ -0.71
VAMP4-203ENST00000474047 IL4P05112 153 aa10.62□□□□□ -0.71
VAMP4-203ENST00000474047 RBMY1DP0C7P1 496 aaKnown RBP10.62□□□□□ -0.71
VAMP4-203ENST00000474047 EIF2B2P49770 351 aaKnown RBP10.62□□□□□ -0.71
VAMP4-203ENST00000474047 ZNF431Q8TF32 576 aaPredicted RBP10.62□□□□□ -0.71
VAMP4-203ENST00000474047 SEC22CQ9BRL7 303 aa10.62□□□□□ -0.71
VAMP4-203ENST00000474047 TM2D3Q9BRN9 247 aa10.62□□□□□ -0.71
VAMP4-203ENST00000474047 TBC1D24Q9ULP9 559 aa10.62□□□□□ -0.71
VAMP4-203ENST00000474047 COL7A1Q02388 2944 aa10.62□□□□□ -0.71
VAMP4-203ENST00000474047 C5orf51A6NDU8 294 aa10.61□□□□□ -0.71
VAMP4-203ENST00000474047 HNRNPCP07910 306 aaKnown RBP eCLIP10.61□□□□□ -0.71
VAMP4-203ENST00000474047 CRYBB3P26998 211 aa10.61□□□□□ -0.71
VAMP4-203ENST00000474047 C12orf45Q8N5I9 185 aaPredicted RBP10.61□□□□□ -0.71
VAMP4-203ENST00000474047 ZBTB8BQ8NAP8 495 aaPredicted RBP10.61□□□□□ -0.71
VAMP4-203ENST00000474047 OR4D5Q8NGN0 318 aa10.61□□□□□ -0.71
VAMP4-203ENST00000474047 PFDN2Q9UHV9 154 aa10.61□□□□□ -0.71
VAMP4-203ENST00000474047 RABAC1Q9UI14 185 aa10.61□□□□□ -0.71
VAMP4-203ENST00000474047 LOC102724200A0A096LPH7 203 aaPredicted RBP10.61□□□□□ -0.71
VAMP4-203ENST00000474047 PSG1P11464 419 aa10.61□□□□□ -0.71
VAMP4-203ENST00000474047 P2RY1P47900 373 aa10.61□□□□□ -0.71
VAMP4-203ENST00000474047 OR51G1Q8NGK1 321 aa10.61□□□□□ -0.71
VAMP4-203ENST00000474047 PBDC1Q9BVG4 233 aa10.61□□□□□ -0.71
VAMP4-203ENST00000474047 GGTLC1Q9BX51 225 aa10.61□□□□□ -0.71
VAMP4-203ENST00000474047 CCSO14618 274 aa10.6□□□□□ -0.71
VAMP4-203ENST00000474047 DEFA1P59665 94 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms